Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  2. Transcript 'Harore.CG.MTP2014.S2...' > 
  3. Transcript 'Mooccu.CG.ELv1_2.S10...' > 
  4. Transcript 'Harore.CG.MTP2014.S1...' > 
  5. Transcript 'KH2012:KH.C1.165.v3....'

Transcript Model

Transcript Id

KH2012:KH.C1.165.v3.A.SL2-1

Possible name(s)

VAMP1; VAMP2; VAMP3

Gene model

KH2012:KH.C1.165

Location

KhC1 [126,601 / 137,334]

Sequences

Amino acid sequence

Length: 134

>KH.C1.165.v3.A.SL2-1
HNCIKIIEMSGYDAVPNPRSYGGTSNYGGPAAPTGGSSQASKKLQQTQAQVDDVVDIMRT
NVDKVLERDQKLSELDDRADALQQGASQFETQAAKLKRKYWWKNCKMWAILIIVILVIII
IIVVSVVTQTQKKT

Nucleotide sequence

Length: 1,355

>KH2012:KH.C1.165.v3.A.SL2-1
AAGTAACTGTTCAGTAGAAAGTTCCAGTATTTCAATAATTGTAAAGATCAGCTTGATAAC
TAAGTTGGGTTTTTGATACTGATTGTTTTGTGTCATATATATCTGGATTGGAGTACATCT
CATAGTACCAACTGAATAACATAACTGCATAAAAATAATTGAAATGTCTGGATACGACGC
GGTCCCAAACCCAAGGTCTTACGGAGGTACATCTAACTATGGAGGTCCAGCTGCACCAAC
TGGAGGTTCATCCCAAGCTTCCAAGAAACTCCAGCAAACACAAGCACAAGTGGATGATGT
TGTGGACATCATGAGGACAAATGTGGACAAAGTGCTCGAGAGGGATCAGAAGTTATCTGA
GCTAGATGACAGGGCAGATGCATTACAGCAAGGCGCGTCCCAGTTTGAGACTCAAGCTGC
AAAACTGAAGAGAAAGTACTGGTGGAAGAATTGCAAGATGTGGGCGATCCTCATCATCGT
TATACTTGTTATTATCATTATTATAGTTGTATCCGTTGTCACCCAAACACAGAAGAAAAC
TTAAGCATAAACATGGACACAATACTGATGACTGTTGCTGGCTCACTACCGAGAATCATT
CAACTATCACCAGCAACATTATTATCTTTAACCTAAGTGTATTTTCCACTCAACATTCAA
TTGTAAAGTACAAGTGTATGGTTTAGTTAGTGTCGTTTCCTTGTGCTTGCAGTGTATGCC
CAAGATTGTATCTTTCATACTTTTACCCAAAAGTATCTATATAAACATGTTAATATTATT
GTACTGACCATTCGTGCAATTTCGTTACGTTGCTAGGTATCTATGCTTACATTTGCACAC
AATTTCAACCAAGTCGAAAAGCTTTAAAATCACTTAATGCAAATTCTATTTATAGATGAG
AAAAAATCAATATTTTCCATTCGAGAGCACATACGCTTTGTGCTTTTATCAAGCAGGTAG
AATAATCGTTGTGTTCAGTATAATTGTTACTCTGATAACATATGTAGTTAAAAACTTCTG
TTTAAGTCAAGCTCCGCATAGCGTAACAGTATTACTCGCAAAACATGTAGTGAACACTCA
TTGTAGTTATTATGCAGACGATTTTGTCGCTGGAGGTTCCATACCGGTTTCAAGCTGTTA
TTTCGAATCGGTAGTAACTTCTTACTGACGTTAATTAGTTACGGTACACGGCAAGGCATG
TTATTTTGCTTGTACATATGAAGTTTACTTTGAGCAATCGTACTAAAACTAAACCTACAA
TTGTCTTGCAAATGTAGTTGTGTGGCTAAATGTTCAGACTGTAATCTGTTACTTGAGTAT
TTTCGCTTCACTTACACTTACGTCAAATTACCAAA

InterProScan

PIRSF
Synaptobrevin/VAMP (IPR016444) - T[20-133] 3.9E-42
Pfam
Synaptobrevin (IPR001388) - T[41-127] 2.3E-35
ProSiteProfiles
Synaptobrevin (IPR001388) - T[43-103] 18.683
PRINTS
Synaptobrevin (IPR001388) - T[48-67] 2.7E-30 - T[68-87] 2.7E-30 - T[104-123] 2.7E-30
ProSitePatterns
Synaptobrevin (IPR001388) - T[61-80] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VAMP3_HUMAN 81.707 % 138 1.43E-43
VAMP2_HUMAN 84.722 % 127 6.71E-39
VAMP1_HUMAN 80.556 % 124 7.15E-38