Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Clone 'cien155420' > 
  2. Transcript 'Phmamm.CG.MTP2014.S3...' > 
  3. Clone 'AHC0AAA192YG05' > 
  4. Transcript 'KH2012:KH.C10.208.v1...' > 
  5. Transcript 'KH2012:KH.C1.165.v3....'

Transcript Model

Transcript Id

KH2012:KH.C1.165.v3.A.SL1-1

Possible name(s)

VAMP1; VAMP2; VAMP3

Gene model

KH2012:KH.C1.165

Location

KhC1 [126,615 / 137,334]

Sequences

Amino acid sequence

Length: 134

>KH.C1.165.v3.A.SL1-1
HNCIKIIEMSGYDAVPNPRSYGGTSNYGGPAAPTGGSSQASKKLQQTQAQVDDVVDIMRT
NVDKVLERDQKLSELDDRADALQQGASQFETQAAKLKRKYWWKNCKMWAILIIVILVIII
IIVVSVVTQTQKKT

Nucleotide sequence

Length: 1,341

>KH2012:KH.C1.165.v3.A.SL1-1
TAGAAAGTTCCAGTATTTCAATAATTGTAAAGATCAGCTTGATAACTAAGTTGGGTTTTT
GATACTGATTGTTTTGTGTCATATATATCTGGATTGGAGTACATCTCATAGTACCAACTG
AATAACATAACTGCATAAAAATAATTGAAATGTCTGGATACGACGCGGTCCCAAACCCAA
GGTCTTACGGAGGTACATCTAACTATGGAGGTCCAGCTGCACCAACTGGAGGTTCATCCC
AAGCTTCCAAGAAACTCCAGCAAACACAAGCACAAGTGGATGATGTTGTGGACATCATGA
GGACAAATGTGGACAAAGTGCTCGAGAGGGATCAGAAGTTATCTGAGCTAGATGACAGGG
CAGATGCATTACAGCAAGGCGCGTCCCAGTTTGAGACTCAAGCTGCAAAACTGAAGAGAA
AGTACTGGTGGAAGAATTGCAAGATGTGGGCGATCCTCATCATCGTTATACTTGTTATTA
TCATTATTATAGTTGTATCCGTTGTCACCCAAACACAGAAGAAAACTTAAGCATAAACAT
GGACACAATACTGATGACTGTTGCTGGCTCACTACCGAGAATCATTCAACTATCACCAGC
AACATTATTATCTTTAACCTAAGTGTATTTTCCACTCAACATTCAATTGTAAAGTACAAG
TGTATGGTTTAGTTAGTGTCGTTTCCTTGTGCTTGCAGTGTATGCCCAAGATTGTATCTT
TCATACTTTTACCCAAAAGTATCTATATAAACATGTTAATATTATTGTACTGACCATTCG
TGCAATTTCGTTACGTTGCTAGGTATCTATGCTTACATTTGCACACAATTTCAACCAAGT
CGAAAAGCTTTAAAATCACTTAATGCAAATTCTATTTATAGATGAGAAAAAATCAATATT
TTCCATTCGAGAGCACATACGCTTTGTGCTTTTATCAAGCAGGTAGAATAATCGTTGTGT
TCAGTATAATTGTTACTCTGATAACATATGTAGTTAAAAACTTCTGTTTAAGTCAAGCTC
CGCATAGCGTAACAGTATTACTCGCAAAACATGTAGTGAACACTCATTGTAGTTATTATG
CAGACGATTTTGTCGCTGGAGGTTCCATACCGGTTTCAAGCTGTTATTTCGAATCGGTAG
TAACTTCTTACTGACGTTAATTAGTTACGGTACACGGCAAGGCATGTTATTTTGCTTGTA
CATATGAAGTTTACTTTGAGCAATCGTACTAAAACTAAACCTACAATTGTCTTGCAAATG
TAGTTGTGTGGCTAAATGTTCAGACTGTAATCTGTTACTTGAGTATTTTCGCTTCACTTA
CACTTACGTCAAATTACCAAA

InterProScan

PIRSF
Synaptobrevin/VAMP (IPR016444) - T[20-133] 3.9E-42
Pfam
Synaptobrevin (IPR001388) - T[41-127] 2.3E-35
ProSiteProfiles
Synaptobrevin (IPR001388) - T[43-103] 18.683
PRINTS
Synaptobrevin (IPR001388) - T[48-67] 2.7E-30 - T[68-87] 2.7E-30 - T[104-123] 2.7E-30
ProSitePatterns
Synaptobrevin (IPR001388) - T[61-80] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VAMP3_HUMAN 81.707 % 138 1.43E-43
VAMP2_HUMAN 84.722 % 127 6.71E-39
VAMP1_HUMAN 80.556 % 124 7.15E-38