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  1. Transcript 'KH2012:KH.C1.165.v1....'

Transcript Model

Transcript Id

KH2012:KH.C1.165.v1.A.SL2-1

Possible name(s)

VAMP1; VAMP2; VAMP3

Gene model

KH2012:KH.C1.165

Location

KhC1 [126,601 / 137,334]

Sequences

Amino acid sequence

Length: 121

>KH.C1.165.v1.A.SL2-1
HNCIKMSYGGTSNYGGPAAPTGGSSQASKKLQQTQAQVDDVVDIMRTNVDKVLERDQKLS
ELDDRADALQQGASQFETQAAKLKRKYWWKNCKMWAILIIVILVIIIIIVVSVVTQTQKK
T

Nucleotide sequence

Length: 1,316

>KH2012:KH.C1.165.v1.A.SL2-1
AAGTAACTGTTCAGTAGAAAGTTCCAGTATTTCAATAATTGTAAAGATCAGCTTGATAAC
TAAGTTGGGTTTTTGATACTGATTGTTTTGTGTCATATATATCTGGATTGGAGTACATCT
CATAGTACCAACTGAATAACATAACTGCATAAAAATGTCTTACGGAGGTACATCTAACTA
TGGAGGTCCAGCTGCACCAACTGGAGGTTCATCCCAAGCTTCCAAGAAACTCCAGCAAAC
ACAAGCACAAGTGGATGATGTTGTGGACATCATGAGGACAAATGTGGACAAAGTGCTCGA
GAGGGATCAGAAGTTATCTGAGCTAGATGACAGGGCAGATGCATTACAGCAAGGCGCGTC
CCAGTTTGAGACTCAAGCTGCAAAACTGAAGAGAAAGTACTGGTGGAAGAATTGCAAGAT
GTGGGCGATCCTCATCATCGTTATACTTGTTATTATCATTATTATAGTTGTATCCGTTGT
CACCCAAACACAGAAGAAAACTTAAGCATAAACATGGACACAATACTGATGACTGTTGCT
GGCTCACTACCGAGAATCATTCAACTATCACCAGCAACATTATTATCTTTAACCTAAGTG
TATTTTCCACTCAACATTCAATTGTAAAGTACAAGTGTATGGTTTAGTTAGTGTCGTTTC
CTTGTGCTTGCAGTGTATGCCCAAGATTGTATCTTTCATACTTTTACCCAAAAGTATCTA
TATAAACATGTTAATATTATTGTACTGACCATTCGTGCAATTTCGTTACGTTGCTAGGTA
TCTATGCTTACATTTGCACACAATTTCAACCAAGTCGAAAAGCTTTAAAATCACTTAATG
CAAATTCTATTTATAGATGAGAAAAAATCAATATTTTCCATTCGAGAGCACATACGCTTT
GTGCTTTTATCAAGCAGGTAGAATAATCGTTGTGTTCAGTATAATTGTTACTCTGATAAC
ATATGTAGTTAAAAACTTCTGTTTAAGTCAAGCTCCGCATAGCGTAACAGTATTACTCGC
AAAACATGTAGTGAACACTCATTGTAGTTATTATGCAGACGATTTTGTCGCTGGAGGTTC
CATACCGGTTTCAAGCTGTTATTTCGAATCGGTAGTAACTTCTTACTGACGTTAATTAGT
TACGGTACACGGCAAGGCATGTTATTTTGCTTGTACATATGAAGTTTACTTTGAGCAATC
GTACTAAAACTAAACCTACAATTGTCTTGCAAATGTAGTTGTGTGGCTAAATGTTCAGAC
TGTAATCTGTTACTTGAGTATTTTCGCTTCACTTACACTTACGTCAAATTACCAAA

InterProScan

PIRSF
Synaptobrevin/VAMP (IPR016444) - T[9-120] 4.0E-42
Pfam
Synaptobrevin (IPR001388) - T[28-114] 1.7E-35
ProSiteProfiles
Synaptobrevin (IPR001388) - T[30-90] 18.683
PRINTS
Synaptobrevin (IPR001388) - T[35-54] 2.2E-30 - T[55-74] 2.2E-30 - T[91-110] 2.2E-30
ProSitePatterns
Synaptobrevin (IPR001388) - T[48-67] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VAMP3_HUMAN 81.707 % 138 9.51E-44
VAMP2_HUMAN 84.722 % 126 4.59E-39
VAMP1_HUMAN 80.556 % 124 3.53E-38