- Transcript 'KH2012:KH.C11.608.v1...'
Transcript Model
Transcript Id
KH2012:KH.C11.608.v1.A.SL1-1
Possible name(s)
IRX3; IRX4; IRX6
Gene model
Location
KhC11 [1,444,265 / 1,452,905]
Amino acid sequence
Length: 571
>KH.C11.608.v1.A.SL1-1
NNTKMSFLPFPVAFSSNPSMTSRTSLSEAQATISDPGRSGLTEQRSPDNGVHFPAEARGI
PGRPTDIASALFGLPYTAQVAHGRLVPPVYPALPPGIDSAALQSTLSRMDPKDFPSWGNP
LHPGPFYPYDPTLMYQHSGYGPMGLSDGARRKNATRETTSTLKAWLNEHRKNPYPTKGEK
IMLAIISKMTLTQVSTWFANARRRLKKENRMTWSPRNRCGEEENERESDEEERGEMREEG
NSPNEMRRTEPRDSDNSNPGTNLSGSNSDLAYQRHQRAHQQQMFLRHLASLPPHLRPVDP
FRHFQLHNQRLATQGMHLLPGNSRSNDHVGALKHDQQRRSSLSSPSASASSYDRSPSPVN
QPRNFRPPPPLNQITSPSKSPSHRFRFSPEPTERGSDEENKKTEARDSKKEKIWSPVSLT
ETTDKPRSITSRDSPPTPRHTIESPVGKSPSNPLAVAQAWMEEYQRHLATRNPQLLASTL
ASIAAKRGSSGGFPFLPFQSGPQSAVSVTSRMESMETSRDDDSLTSDTEAGPNLPMNLSK
NKDRGNHSNDDVPLVIDDVERKPLMRSIVAS
Nucleotide sequence
Length: 2,630
>KH2012:KH.C11.608.v1.A.SL1-1
ATTTACTCTATTAGGCTTTGGCTGTATTATGACCTAACAAATACTAAAATAATACAAAGA
TGTCGTTTCTTCCTTTTCCCGTCGCGTTTTCCTCAAACCCAAGCATGACGTCACGAACCT
CCTTGTCCGAGGCTCAGGCAACAATTTCCGACCCTGGTAGATCAGGGCTTACCGAGCAAC
GTAGCCCGGACAACGGAGTTCATTTTCCCGCCGAAGCCCGTGGAATTCCCGGGCGCCCGA
CTGACATCGCTTCAGCGCTATTTGGTCTCCCATATACCGCCCAGGTCGCACATGGACGGT
TGGTGCCTCCTGTTTACCCAGCCTTGCCACCAGGCATTGACTCAGCAGCATTACAATCCA
CACTCAGTCGAATGGACCCAAAGGATTTCCCATCTTGGGGAAACCCCCTTCACCCAGGCC
CGTTTTACCCCTACGACCCAACTCTTATGTACCAACACAGCGGATATGGACCAATGGGTC
TCAGCGACGGTGCTCGGCGTAAAAACGCAACCCGAGAAACAACATCGACGTTAAAAGCGT
GGCTTAATGAACACAGAAAGAACCCTTACCCAACTAAAGGGGAAAAGATCATGTTAGCTA
TTATTTCGAAGATGACGCTAACGCAGGTTTCGACCTGGTTCGCAAACGCGCGTCGTCGAT
TGAAGAAAGAAAACAGAATGACTTGGTCTCCTCGGAACAGATGTGGGGAAGAAGAGAATG
AAAGAGAAAGCGATGAGGAAGAAAGAGGAGAAATGAGAGAAGAAGGGAATTCCCCGAACG
AGATGAGACGAACCGAGCCACGTGACAGCGACAACAGTAACCCGGGTACGAATCTTAGCG
GAAGCAACTCTGATCTTGCTTATCAACGTCACCAGAGGGCGCACCAACAACAAATGTTCC
TACGTCATCTTGCCTCTCTACCGCCGCACCTGCGACCAGTCGACCCCTTCCGACATTTCC
AGCTTCACAACCAAAGACTCGCAACTCAGGGGATGCACCTACTACCGGGAAATTCCCGCT
CCAACGACCACGTCGGTGCGCTGAAGCATGACCAACAACGAAGGAGCAGTTTAAGCTCTC
CCTCGGCATCCGCATCGAGCTACGACCGATCGCCGTCACCTGTTAATCAACCACGTAACT
TCCGCCCGCCACCCCCCCTGAACCAGATTACGTCACCATCCAAATCGCCGTCGCATCGAT
TCCGCTTCTCTCCCGAACCAACAGAACGCGGCTCTGATGAGGAGAACAAGAAAACCGAAG
CCCGCGACTCCAAAAAGGAGAAGATTTGGTCGCCAGTCTCGCTTACCGAGACCACTGATA
AACCACGGAGTATCACATCCCGGGATTCCCCACCTACCCCACGTCACACAATAGAAAGCC
CTGTAGGAAAATCCCCTTCTAACCCACTGGCTGTTGCCCAAGCTTGGATGGAGGAATACC
AGCGCCACCTAGCAACGAGGAACCCCCAACTTCTAGCTTCGACGTTGGCGTCCATTGCCG
CAAAAAGGGGATCCTCTGGGGGATTTCCCTTTTTGCCCTTCCAGTCGGGTCCCCAGTCGG
CCGTTTCTGTGACGTCACGAATGGAATCCATGGAGACGTCACGTGACGATGACTCTCTGA
CGTCAGACACGGAAGCAGGGCCTAACTTGCCCATGAATCTATCAAAGAACAAAGATCGTG
GTAACCATAGCAATGATGACGTACCCCTCGTTATTGATGACGTAGAAAGAAAGCCACTGA
TGCGATCAATTGTTGCAAGCTAAAGAGATTCGATTATGACGTAAGAATCTGTTCTTTATG
GAAGAAGTTGTGACACCAACACCAGACACTCTGTGACGTAACACTTGTGTAAAGATGCAT
GTGGAAACAATGTAAACGGCGCGAAAATCGCGATTGTTTATTTGACTGAACAGTTGTTTA
TCGTGTGTAGTTCCGCATGAGGGACTTCCCCACACGAACCTATAATTAAAATCCGGATTA
CTCGATGTTATTGTTATTCGTTTGTGTCGAAGACAATGAAATTCAATATCCGGTCGGACA
CGTGACTTTTATGGCGTCTGAACTAAAATCTTTTAAACTTTAATAATTATTTCAATATAA
CCGAACAATACCAGATAACTGTTAGCAAAATTGTTTTTGCCGGAATGTTTTGCGGATTAC
GACAACTGCCATTTTCCTTTGTTGCATACAAAGAGTTCAATCGTTTGTTTTATTTAAATG
TAAACAGAATAATAAGCATCTGCAAATTGGTGCTTTGCCACGTCACAATATCCATTATGT
ATTCCAGAACCTACTAAGTTCATTTTTATTTTACCGGATATGACGTTTCAGTAGCCCTAT
ATGTGTATCGTGACGTCATTAATTGGATTTCGTTTTTATTTGGTTGATACAGGTCTGTTC
CATTACGTCGATGACGTCATGTTATATGTTGATGACGTCATGCTAGTATTTCCCACTATT
AAGTTCTGTGCTATGATTTCTCGTGTGTAGCTTTGCCACTGTTTTAATGACGTAACGTAC
CCATGATGTGACAGATGACGTCATTGGGTCGTGACGTGTGCGCTAGTAACGTAGATGTGC
AATTTACTCCTCATGTTATAACTGGAGTCGTGGAAGCCGGGAAATAAAAT
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[145-208] 12.552 |
| SMART |
Homeobox_dom (IPR001356) - T[147-212] 2.8E-10 |
| CDD |
Homeobox_dom (IPR001356) - T[150-209] 4.12749E-12 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[150-215] 9.84E-17 |
| Pfam |
Homeobox_KN_domain (IPR008422) - T[165-204] 1.7E-14 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[183-206] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| IRX6_HUMAN | 70.69 % | 175 | 5.88E-49 |
| IRX3_HUMAN | 81.176 % | 147 | 3.73E-38 |
| IRX4_HUMAN | 76.289 % | 153 | 2.9E-40 |
