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TRANSCRIPT CARD

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  1. Clone 'ciad010f14' > 
  2. Clone 'cien201578' > 
  3. Clone 'AHC0AAA190YA22' > 
  4. Clone 'cima864117' > 
  5. Transcript 'KH2012:KH.C11.386.v1...'

Transcript Model

Transcript Id

KH2012:KH.C11.386.v1.A.SL1-1

Possible name(s)

LDLRAD3; LRP11; ST14

Gene model

KH2012:KH.C11.386

Location

KhC11 [2,450,937 / 2,459,142]

Sequences

Amino acid sequence

Length: 478

>KH.C11.386.v1.A.SL1-1
SSEMLATPFNIWHVAGVVLVLAKSLEAGLLPDRGSNSNSSVGLFTPNQHGECKMLQTNLF
LLDLACVLKKKARATAHELTSPSLAACKRVCCEWSEGPCDLVYWNRYHKCVVMNYYVLSL
CPLMSPTLTYPGSYTFTLLLSITQRVSPALKQHLLLKGYSSRIAEFLGCGANSFVCNNWQ
CIEKGQVCDGIQHCVDNSDENQCPQIIVASQGDKCIDFKGNFVDNGAEYTPFGKADECQM
CICGNNSQPSYCYSPTCNSRMLTDCEGPNPDICCRCDKSGRNHPDEPTDSEENDMFVNLS
GTQRLIVSCMSVLVVVTLLLFFSRNLMHRARGAIIPSRHRRDRSHNTWMSQQSLPPTRAF
MGRYCSSSDRMSFVDPNDSEDMSEPPPSYSSLKPATRNERGSRSSSGESPPSYNASITLP
PASPEATSSSSANNRDDQVTQSTVSEHVIQSEPIRNEEPISPVSTTSCSPLLVEEHDQ

Nucleotide sequence

Length: 2,277

>KH2012:KH.C11.386.v1.A.SL1-1
ACTCTTCCGAAATGTTAGCAACACCTTTTAATATATGGCATGTGGCTGGAGTGGTTTTAG
TCTTGGCAAAATCCCTGGAAGCAGGACTGTTGCCAGATAGAGGAAGCAATTCGAATAGCT
CTGTCGGATTATTCACCCCAAATCAGCATGGCGAATGCAAGATGCTGCAGACCAATCTTT
TCCTGCTCGATCTGGCTTGTGTTTTGAAGAAAAAGGCCAGGGCAACCGCTCACGAGTTGA
CCTCCCCCTCACTGGCTGCTTGTAAAAGAGTCTGCTGTGAATGGTCAGAGGGGCCATGTG
ACTTGGTGTATTGGAATAGGTACCACAAGTGCGTTGTGATGAACTATTACGTGCTAAGCT
TGTGTCCGCTCATGTCACCAACTCTAACCTACCCAGGAAGCTACACTTTCACTTTACTGT
TGAGCATCACCCAGAGAGTTTCACCTGCACTTAAGCAGCATTTGCTGTTAAAAGGATACA
GTTCTCGAATTGCTGAATTCCTGGGATGTGGAGCTAATTCCTTTGTATGTAACAACTGGC
AATGTATTGAGAAGGGACAAGTATGTGATGGTATTCAGCATTGTGTTGATAATTCTGATG
AAAATCAATGTCCCCAAATTATTGTAGCTTCGCAAGGGGATAAATGCATCGACTTCAAGG
GAAACTTTGTTGATAATGGTGCTGAGTACACACCTTTCGGGAAAGCAGACGAATGCCAGA
TGTGTATTTGCGGCAACAACAGCCAACCCTCCTACTGTTATTCCCCCACATGCAACAGCA
GGATGTTGACGGATTGCGAGGGCCCAAACCCAGATATTTGCTGTCGTTGTGACAAATCGG
GACGAAATCACCCAGATGAACCAACGGACTCGGAAGAAAATGACATGTTTGTCAACCTAT
CTGGAACTCAACGTCTTATAGTGAGTTGTATGTCAGTGCTTGTGGTCGTCACTCTTTTGC
TCTTTTTCTCTCGGAATCTGATGCACAGAGCACGAGGTGCAATTATCCCGAGTCGACATA
GAAGAGATAGATCCCATAACACATGGATGTCACAACAGTCACTTCCACCTACAAGAGCCT
TCATGGGACGTTACTGTAGCAGCAGTGATCGTATGAGTTTTGTTGACCCCAATGATAGCG
AAGACATGTCCGAACCCCCACCCTCGTACAGTTCGTTGAAACCAGCCACCCGGAACGAAC
GTGGGTCAAGGTCTTCAAGCGGGGAATCACCCCCCTCGTACAACGCAAGCATCACCTTAC
CACCAGCAAGTCCAGAAGCTACGTCATCGTCGAGTGCGAACAACCGCGACGACCAGGTCA
CGCAGTCAACCGTGTCCGAACACGTGATACAATCCGAGCCAATCAGAAACGAGGAACCAA
TCAGCCCCGTTAGTACAACTTCATGCAGTCCACTACTCGTCGAGGAACACGACCAGTGAC
GTCATCACGACGTTAGAAACGATTTAGTGACGTCAGAAATAATACGTGACGTCATCCAGG
TTTAGTTTGTCTGGTTTCCCCATTTTCGTTGTTAAATTTATTGTTTAAAATTTCGGCAAC
TGATATACCGGGTTTTTGAACCTGCTGTATTTAAATAGATGCGTTCATTTTATCAGTGTT
TTTTATCGCCCGATACTTTGTTTCGCCATTTTTGATCTGTTTTTGATCAAAATATGGTCT
TCAAAGATTTATCTAGCAATTGTATCACACGTCGCATAGGTTCTTTAACACGCGTATGTG
TCGCTTTAAACTAGTTTAAACCAGTTTAAACCAGTTACAGGCGGCGCGTAATTGTGGTTT
AACCTTCAGGAGTTCGTTTGTTGAAGCGTTAAGATTCGCGGTTCTTACTGTAATTTTAGT
TGCGATTTCTTGGTTTACGCTGCGTGGTATAAAGACCTGTGTAATAGTATTACTAAGTAT
GAAACGCGTGTTAAGAAAAAAAAGAGTATATTTATTCTTTTTTTATACTGTGAATTGAGT
TGTGCTGTTTTTTTAGCACAAAGCTACGTATCTGTTGCGTAAAACTACAACGAACGATAA
AAAATCACCCAACTAGTTTTGTATGAAGTAATTGACGTTCGTTTACAGTTTACAGTTATT
TCCTAATTGCCACCATTTTTTATTTCCCACATGGTTTGTTTTCCCGCACTTTTTGCTTAA
AGCGTTCATTGTACATTCCTGTTAATTGTGAAGTTTTAAAGCCGCTGCAGAGAGAAGCTT
ATTAATAAAACTATAAACTGCAAAATAAAGGTTTTTAACAGTGGAGTTTTACACAAA

InterProScan

SUPERFAMILY
LDL_receptor-like_sf (IPR036055) - T[167-205] 2.09E-10
ProSiteProfiles
LDrepeatLR_classA_rpt (IPR002172) - T[168-204] 11.875
SMART
LDrepeatLR_classA_rpt (IPR002172) - T[168-205] 3.1E-7
Pfam
LDrepeatLR_classA_rpt (IPR002172) - T[169-203] 2.7E-8
CDD
LDrepeatLR_classA_rpt (IPR002172) - T[169-203] 2.37443E-9
ProSitePatterns
LDLR_class-A_CS (IPR023415) - T[181-203] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value