- Molecular Tool 'FGF8/17/18>EphrinAb (Stolfi 2011)' >
- Region 'REG00000129' >
- Transcript 'KH2012:KH.C11.313.v2...'
Transcript Model
Transcript Id
KH2012:KH.C11.313.v2.A.nonSL2-2
Possible name(s)
FOXA1; FOXA2; FOXA3
Gene model
Location
KhC11 [4,402,423 / 4,404,793]
Amino acid sequence
Length: 596
>KH.C11.313.v2.A.nonSL2-2
NRITFASTKMMLSSPPSKYQPFQQSYATGMNNMTNGMQPSYVNQMNPMSLTAAGNQVGFN
QALPQGYGGVSFNGMGTSAMNGHSPHSVQIAAAAAAAVGSPPMGTAYAGMPTGVGITPNM
ALMLNRRTEKQYRRNYTHAKPPYSYISLITMALQSSPNKMMTLSEIYNWIMDLFPFYRQN
QQRWQNSIRHSLSFNDCFVKVPRSADKPGKGSYWSLHPDAGNMFENGCYLRRQKRFKSNK
KSKGAGPSSDEHSPLELVPNDAVSPPPSMSNPGSTHNSPHNSHETYADSDTDNKSPDLAS
STAITSHDQLYNQQHTSLGHGMLQQIPAPTHDNSSANHPSQTNNPAYPSQTDHNDKLQHH
HTQQQSAVEVSSPSNTPTSENMALNTHSLHELVPAGDKTDERTHHSIPHPMNQEHHLVGH
EQDPSHHLYSHYAQATAYAAAVQHNSFAAVAAAHSFAPHPFSISSLMNVSDPQQQHYQQH
PHHQSYTQAKDLRAYQDAVQYYNNGMNSLTGLMPPPSVNDTIPQCSIAPSGSPVNSASSS
SVSTPSPSSSSSASHYSSALHYPLHQQQQLHIPSDHLNHQPDHTESAYYPGCVPAS
Nucleotide sequence
Length: 2,370
>KH2012:KH.C11.313.v2.A.nonSL2-2
TTTCTATTTGAAATATTATACACAACTGCTGCTGTAATTTCTGAGAAAGCTTTTGAAATC
GGATTACTTTTGCAAGTACAAAAATGATGTTGTCGTCTCCACCGTCAAAGTACCAACCCT
TCCAACAGTCTTATGCTACTGGTATGAACAATATGACCAACGGTATGCAGCCTTCATACG
TCAACCAGATGAACCCAATGTCGCTTACAGCTGCTGGCAACCAGGTCGGATTTAACCAAG
CTTTACCGCAAGGATATGGCGGCGTATCGTTTAATGGTATGGGCACAAGTGCGATGAACG
GCCACTCACCCCACAGCGTTCAAATTGCTGCCGCGGCCGCTGCTGCTGTCGGATCCCCGC
CTATGGGCACTGCGTATGCCGGCATGCCGACGGGCGTTGGAATCACGCCGAATATGGCGC
TCATGTTAAACAGAAGGACCGAGAAGCAATACAGAAGAAACTACACCCATGCTAAGCCAC
CATACAGTTATATTTCACTCATTACAATGGCCCTACAGTCATCGCCCAACAAAATGATGA
CCTTAAGTGAAATATACAACTGGATCATGGACCTTTTTCCATTCTACCGACAAAACCAAC
AAAGATGGCAAAATTCAATCCGCCATAGCTTGTCATTCAACGATTGCTTCGTTAAAGTAC
CGAGATCGGCAGACAAACCTGGCAAAGGTTCATATTGGTCGCTACACCCAGACGCTGGAA
ACATGTTCGAAAATGGCTGCTATTTGCGTCGCCAGAAAAGATTCAAAAGCAATAAGAAAT
CAAAGGGCGCTGGACCAAGCTCAGATGAACACTCACCGCTAGAACTTGTCCCCAACGATG
CTGTCAGCCCTCCACCATCGATGTCAAACCCAGGATCCACCCACAACAGTCCACACAACA
GTCATGAAACTTACGCAGATTCAGACACGGACAACAAGTCGCCCGACCTTGCTTCATCGA
CGGCCATAACCTCCCACGATCAGTTATACAACCAACAACACACATCGCTTGGGCATGGGA
TGCTTCAACAAATTCCAGCACCTACGCACGATAATTCCTCAGCTAACCACCCCAGCCAAA
CAAACAACCCAGCTTACCCCAGCCAAACAGATCACAACGACAAGCTTCAACACCACCACA
CTCAACAGCAATCTGCCGTTGAAGTTAGTTCGCCATCCAACACCCCAACCTCAGAGAACA
TGGCATTGAACACGCATTCCTTGCATGAGTTGGTTCCAGCTGGGGATAAAACCGACGAGA
GAACCCACCATAGCATTCCACACCCCATGAACCAGGAGCATCATTTAGTCGGCCATGAAC
AAGACCCATCACATCACCTGTATTCTCATTACGCCCAAGCAACAGCATATGCCGCTGCAG
TTCAACACAACTCGTTCGCTGCTGTAGCCGCCGCGCATTCTTTTGCACCACACCCATTTT
CGATCAGCAGTCTTATGAATGTTTCAGACCCTCAGCAACAGCATTATCAGCAGCACCCTC
ACCACCAGAGCTACACCCAAGCAAAAGACCTACGAGCTTACCAAGACGCAGTGCAATATT
ACAACAACGGAATGAACTCTCTCACTGGCTTGATGCCACCACCATCAGTGAATGACACTA
TCCCTCAGTGTTCTATCGCGCCCTCAGGCTCGCCGGTAAATTCAGCTTCCTCGTCATCAG
TGTCCACTCCGTCTCCTTCGTCGTCTTCATCAGCTTCCCATTATTCCAGTGCTTTACACT
ACCCGCTCCACCAACAGCAGCAACTTCACATACCCAGTGACCACCTCAACCACCAGCCCG
ACCACACCGAATCTGCATACTACCCAGGGTGCGTACCAGCAAGCTAAGGCAAGCCAGCAC
GTACTAAGCTGTACTAATACTATAAAAACGGTGCATGCCAGTAACTGTATACACAGCATG
GAGCCCAAGGCTTCTCGCATGCATTTCGTGCCAAAACCCTCAGTGTCGAAGATTTGGTTT
GATACGAATCATAAACACTGTGTATTGGCATCTCTACCGATATAGTTTCTTTTCTTTGTG
CTTGCTTTTGTCTATTTATTGTTTTGTTTGTTTGCCCGCTTTTTCTAACTGTTAAAGCAA
TATACCAATTGCATCTCACTCCCAAATAACACAAATGTTGCATTAAATACACAATAACTG
CTGCAAAAATTTGTCTCTTTCAATTCTAACACTTTCGCTCAACTGCTATATAAATACCGG
CCAACACAAAACTGTGCAATTTCTTTGCATGTTTTCGTTTCTCATTCGCTCATAGTTTCT
CAATATACACCTTTCGTCGGCCGCTTAAAAGCAATATTTGCCACATTGAATACTGTGCAC
ATCAATTTTGTAAATAAACCTTGTTTTTGT
| Pfam |
Fork-head_N (IPR013638) - T[17-139] 8.3E-18 |
| SMART |
Fork_head_dom (IPR001766) - T[138-228] 6.1E-61 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[138-239] 6.0E-47 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[140-234] 2.68E-40 |
| Pfam |
Fork_head_dom (IPR001766) - T[140-224] 4.0E-38 |
| ProSitePatterns |
TF_fork_head_CS_1 (IPR018122) - T[140-153] . |
| ProSiteProfiles |
Fork_head_dom (IPR001766) - T[140-234] 39.348 |
| PRINTS |
Fork_head_dom (IPR001766) - T[140-153] 3.1E-23 - T[161-178] 3.1E-23 - T[184-201] 3.1E-23 |
| CDD |
Fork_head_dom (IPR001766) - T[140-217] 1.03292E-49 |
| ProSitePatterns |
TF_fork_head_CS_2 (IPR030456) - T[184-190] . |
| Pfam |
Forkhead_box_C (IPR018533) - T[459-557] 5.9E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FOXA3_HUMAN | 75.397 % | 217 | 2.59E-65 |
| FOXA2_HUMAN | 86.087 % | 233 | 5.87E-70 |
| FOXA1_HUMAN | 57.767 % | 224 | 1.91E-66 |