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- Transcript 'KH2012:KH.C1.1220.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1220.v1.R.ND1-1
Possible name(s)
COL12A1; COL20A1; SELP
Gene model
Location
KhC1 [426,730 / 433,638]
Amino acid sequence
Length: 505
>KH.C1.1220.v1.R.ND1-1
ILFCAGIAAGLQCWTCDNVFSHQDCLDQGRLVTCDDSQTTCQIELRHGGWGNNPLIKKSC
KQLTACGSNHMQDLGSASITNLDTQCNMKPPSSVCRCCCNTDGCNHYVMTCDQLGGRGGG
SCKRLRAPRNGRMKCTGGNGPLSSCVFTCNRGHMMIGAAVSTCDYFSTRDNPAPICEPIK
CEYPVVPQNGSVTCTRGRAVGSRCRYNCDEGYKLVGATYMTCTEETMGGTYGLWSRMPPV
CQPKQCPLQNLRNGRIDCTNSNFVGSTCALICSAELGYQVYPPTTQALNCQSNEEWDKAM
PCCSRPCPPFAVMDFVVVLDSSSSVGRSNWNKMKAFVRSFIADFSIRDDATHVSVVRYNR
HVDTTTQILLDDHPNSSEDLLAAFDRIPYNGSGTRTGQALNYTAGTLIPTGNRPNARDVV
LLITDGASQDDVVVPSQNLHATGALVFVLPVQPPRVRLRMDEIYTIAGNRANVITDALEG
GFAALDEEFAGRISQLLCASPCPLN
Nucleotide sequence
Length: 2,121
>KH2012:KH.C1.1220.v1.R.ND1-1
TTATCTTGTTTTGTGCGGGAATTGCGGCGGGTTTGCAATGTTGGACATGCGATAATGTGT
TCAGTCACCAGGATTGTCTCGACCAAGGAAGACTGGTAACCTGCGATGATAGTCAGACCA
CGTGCCAGATCGAGCTACGTCACGGGGGTTGGGGGAATAACCCGTTGATTAAGAAATCTT
GTAAACAACTTACAGCGTGTGGTTCGAATCATATGCAGGACCTAGGATCAGCGTCGATTA
CCAACCTTGACACGCAGTGTAATATGAAACCTCCGTCATCTGTGTGCAGATGTTGTTGTA
ATACGGATGGTTGTAACCATTATGTGATGACGTGTGACCAGTTAGGGGGGAGGGGAGGTG
GATCCTGTAAGAGGCTGAGAGCACCTCGTAATGGTAGGATGAAATGCACCGGAGGCAACG
GCCCTCTAAGTTCATGTGTGTTTACATGTAACCGGGGCCATATGATGATTGGTGCGGCTG
TATCAACATGCGATTACTTCAGTACGAGAGATAACCCCGCCCCTATTTGTGAGCCAATCA
AATGCGAGTATCCAGTGGTACCACAAAATGGGTCTGTGACGTGTACAAGAGGTCGCGCGG
TCGGCAGCAGATGCAGATATAACTGCGATGAAGGCTACAAGTTGGTCGGTGCAACGTACA
TGACATGCACAGAGGAAACCATGGGTGGGACTTATGGTTTATGGAGTAGAATGCCACCTG
TATGCCAACCCAAACAATGCCCGTTGCAGAACCTCCGCAACGGGAGGATAGATTGCACCA
ACTCCAACTTTGTCGGATCAACTTGTGCATTAATTTGCAGTGCCGAGTTAGGTTATCAAG
TCTACCCACCGACCACACAAGCCCTCAACTGTCAATCAAATGAGGAATGGGACAAAGCGA
TGCCTTGTTGCTCACGTCCCTGCCCACCGTTTGCCGTGATGGACTTCGTAGTTGTACTTG
ATTCGTCGTCATCTGTTGGTCGTTCAAACTGGAACAAAATGAAAGCATTTGTTAGAAGTT
TTATCGCTGACTTTAGTATACGTGATGACGCTACACACGTAAGCGTGGTAAGGTACAACC
GTCACGTGGATACAACTACACAGATTCTATTGGACGACCACCCTAATAGTTCGGAAGATT
TGCTTGCAGCATTCGACAGGATACCTTACAATGGGAGTGGCACACGCACTGGGCAAGCAC
TCAACTACACAGCCGGTACATTAATACCAACAGGCAACCGACCCAACGCTAGAGATGTCG
TTTTACTTATAACTGACGGTGCGTCACAGGATGACGTAGTGGTGCCGTCACAAAACTTAC
ATGCAACTGGCGCCTTAGTATTCGTTTTACCTGTCCAACCTCCCCGAGTTCGTCTTCGCA
TGGATGAGATCTACACCATAGCTGGCAATCGTGCCAATGTTATCACAGATGCATTGGAGG
GCGGGTTCGCAGCTCTTGATGAAGAATTCGCCGGCAGAATCAGCCAACTGCTTTGTGCAT
CTCCTTGCCCGTTGAACTAACGCATCATATCTTGGTATAGTGGGGTGGGGGAAGATGGGA
CACATTTAGAACATAATATTTAAATATCTTGATCGTGTTTTAAACAATCACCAACGGTCC
CTGAGAGTCGCGAGGATACGGTTTTATAATTCTTCGAATATTCGCCTATCTTCCCAATCC
TACTATACATCTGGATATTATTTTAACTTTTACAATCAATGAGCTTGTTTAGGTTATGAA
TCTGTATATGAATCTACACGTTATAATAAGCATTAGTTATGTGGCTATTTATGTATAGTA
GGTTGGGGTAAGTTTGGCTTTGTTATTATTCCCTTTTATCGTCTTATTTGGTGGCAAACA
AGGTATAATCAAAGAAATATATATATACCCGTATTGTTGGGGATTTTAAAGAGCGTTTTC
AACTGTTCAAAACACGAATAAGAAATCTGAGTCCTTATGCGTGTTAACGGTATCCATCTT
ACCCCACACTTCTATCTACGTTTACCTAACCATTGCTCCAGCGGCTTACTTATTTCATCG
ATGACGTAACAGACATATCTTTACTACGTCATAGCATAAACTGTGTAATAGTAGAATCGT
TTAAGATTTTATCGACTGCCT
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[120-178] 6.231 - T[179-243] 10.343 - T[244-305] 7.205 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[121-190] 3.2E-11 - T[175-243] 2.36E-14 - T[240-305] 1.15E-5 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[122-176] 1.2E-4 - T[181-241] 5.4E-12 - T[246-303] 4.1 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[122-177] 4.19734E-7 - T[181-242] 1.28293E-12 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[181-241] 2.3E-7 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[307-498] 4.3E-40 |
| SMART |
VWF_A (IPR002035) - T[312-490] 8.7E-25 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[312-501] 2.2E-36 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[314-493] 23.179 |
| Pfam |
VWF_A (IPR002035) - T[314-467] 6.6E-27 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LYAM3_HUMAN | 30.516 % | 91.3 | 2.4E-19 |
| LYAM2_HUMAN | 31.443 % | 85.1 | 1.85E-17 |
| COCA1_HUMAN | 36.486 % | 89.4 | 1.51E-18 |