- Transcript 'KH2012:KH.C1.1220.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1220.v1.A.nonSL3-1
Possible name(s)
COL12A1; COL20A1; SELP
Gene model
Location
KhC1 [426,699 / 433,638]
Amino acid sequence
Length: 516
>KH.C1.1220.v1.A.nonSL3-1
RILFKMLKLCLILFCAGIAAGLQCWTCDNVFSHQDCLDQGRLVTCDDSQTTCQIELRHGG
WGNNPLIKKSCKQLTACGSNHMQDLGSASITNLDTQCNMKPPSSVCRCCCNTDGCNHYVM
TCDQLGGRGGGSCKRLRAPRNGRMKCTGGNGPLSSCVFTCNRGHMMIGAAVSTCDYFSTR
DNPAPICEPIKCEYPVVPQNGSVTCTRGRAVGSRCRYNCDEGYKLVGATYMTCTEETMGG
TYGLWSRMPPVCQPKQCPLQNLRNGRIDCTNSNFVGSTCALICSAELGYQVYPPTTQALN
CQSNEEWDKAMPCCSRPCPPFAVMDFVVVLDSSSSVGRSNWNKMKAFVRSFIADFSIRDD
ATHVSVVRYNRHVDTTTQILLDDHPNSSEDLLAAFDRIPYNGSGTRTGQALNYTAGTLIP
TGNRPNARDVVLLITDGASQDDVVVPSQNLHATGALVFVLPVQPPRVRLRMDEIYTIAGN
RANVITDALEGGFAALDEEFAGRISQLLCASPCPLN
Nucleotide sequence
Length: 2,152
>KH2012:KH.C1.1220.v1.A.nonSL3-1
AGAATTCTTTTCAAGATGTTGAAGTTGTGTCTTATCTTGTTTTGTGCGGGAATTGCGGCG
GGTTTGCAATGTTGGACATGCGATAATGTGTTCAGTCACCAGGATTGTCTCGACCAAGGA
AGACTGGTAACCTGCGATGATAGTCAGACCACGTGCCAGATCGAGCTACGTCACGGGGGT
TGGGGGAATAACCCGTTGATTAAGAAATCTTGTAAACAACTTACAGCGTGTGGTTCGAAT
CATATGCAGGACCTAGGATCAGCGTCGATTACCAACCTTGACACGCAGTGTAATATGAAA
CCTCCGTCATCTGTGTGCAGATGTTGTTGTAATACGGATGGTTGTAACCATTATGTGATG
ACGTGTGACCAGTTAGGGGGGAGGGGAGGTGGATCCTGTAAGAGGCTGAGAGCACCTCGT
AATGGTAGGATGAAATGCACCGGAGGCAACGGCCCTCTAAGTTCATGTGTGTTTACATGT
AACCGGGGCCATATGATGATTGGTGCGGCTGTATCAACATGCGATTACTTCAGTACGAGA
GATAACCCCGCCCCTATTTGTGAGCCAATCAAATGCGAGTATCCAGTGGTACCACAAAAT
GGGTCTGTGACGTGTACAAGAGGTCGCGCGGTCGGCAGCAGATGCAGATATAACTGCGAT
GAAGGCTACAAGTTGGTCGGTGCAACGTACATGACATGCACAGAGGAAACCATGGGTGGG
ACTTATGGTTTATGGAGTAGAATGCCACCTGTATGCCAACCCAAACAATGCCCGTTGCAG
AACCTCCGCAACGGGAGGATAGATTGCACCAACTCCAACTTTGTCGGATCAACTTGTGCA
TTAATTTGCAGTGCCGAGTTAGGTTATCAAGTCTACCCACCGACCACACAAGCCCTCAAC
TGTCAATCAAATGAGGAATGGGACAAAGCGATGCCTTGTTGCTCACGTCCCTGCCCACCG
TTTGCCGTGATGGACTTCGTAGTTGTACTTGATTCGTCGTCATCTGTTGGTCGTTCAAAC
TGGAACAAAATGAAAGCATTTGTTAGAAGTTTTATCGCTGACTTTAGTATACGTGATGAC
GCTACACACGTAAGCGTGGTAAGGTACAACCGTCACGTGGATACAACTACACAGATTCTA
TTGGACGACCACCCTAATAGTTCGGAAGATTTGCTTGCAGCATTCGACAGGATACCTTAC
AATGGGAGTGGCACACGCACTGGGCAAGCACTCAACTACACAGCCGGTACATTAATACCA
ACAGGCAACCGACCCAACGCTAGAGATGTCGTTTTACTTATAACTGACGGTGCGTCACAG
GATGACGTAGTGGTGCCGTCACAAAACTTACATGCAACTGGCGCCTTAGTATTCGTTTTA
CCTGTCCAACCTCCCCGAGTTCGTCTTCGCATGGATGAGATCTACACCATAGCTGGCAAT
CGTGCCAATGTTATCACAGATGCATTGGAGGGCGGGTTCGCAGCTCTTGATGAAGAATTC
GCCGGCAGAATCAGCCAACTGCTTTGTGCATCTCCTTGCCCGTTGAACTAACGCATCATA
TCTTGGTATAGTGGGGTGGGGGAAGATGGGACACATTTAGAACATAATATTTAAATATCT
TGATCGTGTTTTAAACAATCACCAACGGTCCCTGAGAGTCGCGAGGATACGGTTTTATAA
TTCTTCGAATATTCGCCTATCTTCCCAATCCTACTATACATCTGGATATTATTTTAACTT
TTACAATCAATGAGCTTGTTTAGGTTATGAATCTGTATATGAATCTACACGTTATAATAA
GCATTAGTTATGTGGCTATTTATGTATAGTAGGTTGGGGTAAGTTTGGCTTTGTTATTAT
TCCCTTTTATCGTCTTATTTGGTGGCAAACAAGGTATAATCAAAGAAATATATATATACC
CGTATTGTTGGGGATTTTAAAGAGCGTTTTCAACTGTTCAAAACACGAATAAGAAATCTG
AGTCCTTATGCGTGTTAACGGTATCCATCTTACCCCACACTTCTATCTACGTTTACCTAA
CCATTGCTCCAGCGGCTTACTTATTTCATCGATGACGTAACAGACATATCTTTACTACGT
CATAGCATAAACTGTGTAATAGTAGAATCGTTTAAGATTTTATCGACTGCCT
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[131-189] 6.231 - T[190-254] 10.343 - T[255-316] 7.205 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[132-201] 3.34E-11 - T[186-254] 2.5E-14 - T[251-316] 1.2E-5 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[133-187] 1.2E-4 - T[192-252] 5.4E-12 - T[257-314] 4.1 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[133-188] 3.88989E-7 - T[192-253] 1.05778E-12 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[192-252] 2.4E-7 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[318-509] 4.45E-40 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[323-512] 2.3E-36 |
| SMART |
VWF_A (IPR002035) - T[323-501] 8.7E-25 |
| Pfam |
VWF_A (IPR002035) - T[325-478] 6.8E-27 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[325-504] 23.179 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LYAM3_HUMAN | 30.516 % | 91.3 | 2.73E-19 |
| LYAM2_HUMAN | 31.443 % | 85.1 | 1.8E-17 |
| COCA1_HUMAN | 36.486 % | 89.7 | 1.18E-18 |