- Transcript 'KH2012:KH.C1.1156.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1156.v1.A.nonSL5-1
Possible name(s)
COL21A1; COL6A5; OTOL1
Gene model
Location
KhC1 [584,082 / 585,698]
Amino acid sequence
Length: 395
>KH.C1.1156.v1.A.nonSL5-1
GPPGLSSSDVETVKVVRQTDGPRGPKGEKGESITGTPGVKGDKGMPGMKGEGVEGPVGAP
GPRGPTGPKGDIGVGVVGPRGLPGPPGTPGVGSRGRDGVDGEKGEMGPRGLQGPPGESGN
QGSGNLVNGGSVKGGKGDKGEAGRKGMRGDDGVDGRPGRNGAATKGMKGMSGPPGPPGAS
VKGEAGPPGPPGPAGRSGGRMSMGGSSSSSSSAQCCRREQVAFMAALSHNFQGNNQGVAF
DNVLTNIGSAYRSATGCFIVPAGGIYVFHLHILRCRSSGPLYVHMMRNNEMVSSGTNQDT
RFETTSASAVLTLQRGDVVWVRLRQGIIYGHSPSHYSTFSGYAIQLNEAVNVAAAMANQR
YKSGSSYNLYRESTSNVLTEEAAARARSMMMSGND
Nucleotide sequence
Length: 1,616
>KH2012:KH.C1.1156.v1.A.nonSL5-1
GGACCTCCTGGACTTTCATCAAGTGATGTAGAGACAGTTAAGGTTGTTCGGCAAACTGAT
GGGCCGCGGGGACCGAAGGGTGAAAAGGGGGAGTCGATAACAGGTACTCCTGGTGTTAAG
GGCGATAAAGGGATGCCTGGTATGAAGGGGGAAGGTGTGGAAGGACCTGTTGGCGCTCCT
GGGCCTAGAGGACCTACAGGGCCAAAGGGGGACATTGGTGTCGGTGTCGTTGGGCCAAGA
GGGCTCCCTGGTCCACCGGGCACACCTGGGGTTGGGAGCAGGGGTAGAGATGGTGTCGAC
GGCGAAAAGGGGGAGATGGGACCACGTGGGTTGCAAGGACCACCCGGGGAATCTGGGAAT
CAAGGAAGTGGTAACCTTGTTAATGGTGGGTCTGTGAAAGGGGGCAAGGGAGATAAAGGT
GAAGCTGGTAGAAAGGGTATGCGGGGCGATGATGGTGTTGACGGGCGTCCTGGTCGCAAT
GGGGCGGCTACTAAAGGTATGAAGGGAATGTCCGGTCCACCTGGACCTCCAGGAGCATCG
GTGAAGGGAGAAGCAGGTCCGCCAGGTCCCCCAGGTCCTGCAGGGAGATCAGGAGGTAGG
ATGAGCATGGGAGGATCGAGTAGTTCCTCCTCATCTGCACAATGTTGTAGGAGGGAGCAG
GTCGCTTTCATGGCGGCATTGTCGCATAACTTTCAAGGCAACAACCAAGGGGTGGCGTTT
GATAATGTGCTTACTAACATTGGATCTGCGTATAGATCGGCTACTGGATGCTTCATTGTA
CCAGCGGGTGGGATATATGTCTTCCATCTACATATACTTAGATGTAGAAGCAGTGGGCCG
TTGTACGTTCATATGATGCGAAACAACGAGATGGTCAGTTCAGGTACCAACCAAGACACA
AGGTTTGAAACAACCTCAGCAAGTGCTGTATTAACATTACAACGTGGGGACGTGGTTTGG
GTGCGGCTGCGACAAGGTATAATATACGGACACAGCCCTTCACATTACTCAACCTTTTCC
GGCTACGCGATCCAACTAAACGAAGCCGTAAACGTCGCCGCTGCCATGGCGAACCAGAGA
TACAAGTCAGGTTCAAGTTACAACTTATACAGAGAATCGACATCGAACGTTTTAACCGAA
GAAGCGGCGGCACGAGCAAGGTCTATGATGATGAGTGGTAACGACTGATACGGGGCGAGA
CATAAACCAAGTGGTTGGTGAAGGGGAGCCCGTGATGGGAATATTTATTTTTGATTACAT
TGTTTTTATAGAGCGCCATACGCTACACACGCGTGTTTATCAAGGTGTATTTCAACGACG
ATATCTTAAACATACACCACTATACTGGGAAGTCAAACTGAAGAGTTTATTATCCGCGAA
AATTTCACATTTGCTTCATTGCTTTTTTATATTCACTATTGTATGTTTAGTTGTTGCATC
CGCGTATTAAGATTTATTCACAGCAGTATTACTGACGTGTGGGGCACACAAGTATCATGA
GTGTGGTGTACTTGATAATAATGGCACCTCACAGTAAATATGCGACCCCCACCCACACAA
TCACAATATGTTCCATTTACAATGAATATACGTGTGTTGCGATGTAAGCGAGAAAT
| SMART |
C1q_dom (IPR001073) - T[214-347] 1.7E-19 |
| ProSiteProfiles |
C1q_dom (IPR001073) - T[216-350] 29.368 |
| Gene3D |
Tumour_necrosis_fac-like_dom (IPR008983) - T[217-351] 4.3E-36 |
| SUPERFAMILY |
Tumour_necrosis_fac-like_dom (IPR008983) - T[219-344] 3.22E-29 |
| Pfam |
C1q_dom (IPR001073) - T[222-342] 6.8E-27 |
| PRINTS |
C1q_dom (IPR001073) - T[231-257] 4.8E-13 - T[258-277] 4.8E-13 - T[303-324] 4.8E-13 - T[335-345] 4.8E-13 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| C1T9B_HUMAN | 31.511 % | 92.4 | 6.26E-21 |
| OTOL1_HUMAN | 34.262 % | 112 | 3.17E-27 |
| C1T9A_HUMAN | 31.511 % | 91.7 | 1.32E-20 |
