- Transcript 'KH2012:KH.C1.1156.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1156.v1.A.nonSL3-1
Possible name(s)
COL21A1; COL6A5; OTOL1
Gene model
Location
KhC1 [584,082 / 586,341]
Amino acid sequence
Length: 609
>KH.C1.1156.v1.A.nonSL3-1
EQQSGEAKGCASSDCQSTTSECGSSYEYKRDCVSYGCCGCCGCGGCGSSSTGTSEISLLL
RTMDRLTQGPPGPQGPPGLQGPAGFPGMPGPPGKAGFPGIQGQTGLQGPPGIGIKGMKGD
CGPRGERGENGTPGICKPGLPGKPGPPGPPGVVYTSEELQSSPLKIAGPPGQPGEKGTQG
EPGMPGIEGERGETGVGVKGEPGMKGMTGPPGPPGPPGLSSSDVETVKVVRQTDGPRGPK
GEKGESITGTPGVKGDKGMPGMKGEGVEGPVGAPGPRGPTGPKGDIGVGVVGPRGLPGPP
GTPGVGSRGRDGVDGEKGEMGPRGLQGPPGESGNQGSGNLVNGGSVKGGKGDKGEAGRKG
MRGDDGVDGRPGRNGAATKGMKGMSGPPGPPGASVKGEAGPPGPPGPAGRSGGRMSMGGS
SSSSSSAQCCRREQVAFMAALSHNFQGNNQGVAFDNVLTNIGSAYRSATGCFIVPAGGIY
VFHLHILRCRSSGPLYVHMMRNNEMVSSGTNQDTRFETTSASAVLTLQRGDVVWVRLRQG
IIYGHSPSHYSTFSGYAIQLNEAVNVAAAMANQRYKSGSSYNLYRESTSNVLTEEAAARA
RSMMMSGND
Nucleotide sequence
Length: 2,259
>KH2012:KH.C1.1156.v1.A.nonSL3-1
AGAGCAACAAAGCGGGGAAGCGAAAGGCTGCGCGTCGTCTGATTGTCAATCAACGACCAG
TGAATGCGGGTCAAGTTATGAATATAAGAGGGATTGTGTGTCTTATGGTTGCTGTGGTTG
TTGTGGATGTGGGGGTTGTGGTTCAAGTTCAACCGGGACGTCGGAGATTAGTTTATTACT
AAGGACGATGGACAGGTTAACTCAAGGACCTCCCGGCCCACAAGGACCACCGGGTTTGCA
AGGTCCCGCGGGCTTTCCTGGCATGCCAGGCCCGCCGGGGAAGGCAGGATTTCCCGGTAT
CCAAGGTCAGACCGGATTACAAGGCCCGCCTGGGATCGGCATCAAAGGAATGAAGGGAGA
TTGTGGACCTCGAGGTGAACGTGGTGAGAACGGAACACCCGGGATATGTAAGCCAGGACT
ACCGGGCAAACCTGGCCCACCTGGTCCACCAGGGGTGGTGTATACGTCGGAAGAACTACA
GAGTTCTCCATTGAAGATTGCAGGGCCGCCTGGACAGCCTGGTGAGAAGGGAACGCAAGG
TGAACCTGGGATGCCAGGGATTGAAGGGGAGAGGGGGGAGACGGGAGTTGGAGTTAAAGG
TGAACCTGGTATGAAAGGAATGACTGGTCCTCCGGGTCCTCCTGGACCTCCTGGACTTTC
ATCAAGTGATGTAGAGACAGTTAAGGTTGTTCGGCAAACTGATGGGCCGCGGGGACCGAA
GGGTGAAAAGGGGGAGTCGATAACAGGTACTCCTGGTGTTAAGGGCGATAAAGGGATGCC
TGGTATGAAGGGGGAAGGTGTGGAAGGACCTGTTGGCGCTCCTGGGCCTAGAGGACCTAC
AGGGCCAAAGGGGGACATTGGTGTCGGTGTCGTTGGGCCAAGAGGGCTCCCTGGTCCACC
GGGCACACCTGGGGTTGGGAGCAGGGGTAGAGATGGTGTCGACGGCGAAAAGGGGGAGAT
GGGACCACGTGGGTTGCAAGGACCACCCGGGGAATCTGGGAATCAAGGAAGTGGTAACCT
TGTTAATGGTGGGTCTGTGAAAGGGGGCAAGGGAGATAAAGGTGAAGCTGGTAGAAAGGG
TATGCGGGGCGATGATGGTGTTGACGGGCGTCCTGGTCGCAATGGGGCGGCTACTAAAGG
TATGAAGGGAATGTCCGGTCCACCTGGACCTCCAGGAGCATCGGTGAAGGGAGAAGCAGG
TCCGCCAGGTCCCCCAGGTCCTGCAGGGAGATCAGGAGGTAGGATGAGCATGGGAGGATC
GAGTAGTTCCTCCTCATCTGCACAATGTTGTAGGAGGGAGCAGGTCGCTTTCATGGCGGC
ATTGTCGCATAACTTTCAAGGCAACAACCAAGGGGTGGCGTTTGATAATGTGCTTACTAA
CATTGGATCTGCGTATAGATCGGCTACTGGATGCTTCATTGTACCAGCGGGTGGGATATA
TGTCTTCCATCTACATATACTTAGATGTAGAAGCAGTGGGCCGTTGTACGTTCATATGAT
GCGAAACAACGAGATGGTCAGTTCAGGTACCAACCAAGACACAAGGTTTGAAACAACCTC
AGCAAGTGCTGTATTAACATTACAACGTGGGGACGTGGTTTGGGTGCGGCTGCGACAAGG
TATAATATACGGACACAGCCCTTCACATTACTCAACCTTTTCCGGCTACGCGATCCAACT
AAACGAAGCCGTAAACGTCGCCGCTGCCATGGCGAACCAGAGATACAAGTCAGGTTCAAG
TTACAACTTATACAGAGAATCGACATCGAACGTTTTAACCGAAGAAGCGGCGGCACGAGC
AAGGTCTATGATGATGAGTGGTAACGACTGATACGGGGCGAGACATAAACCAAGTGGTTG
GTGAAGGGGAGCCCGTGATGGGAATATTTATTTTTGATTACATTGTTTTTATAGAGCGCC
ATACGCTACACACGCGTGTTTATCAAGGTGTATTTCAACGACGATATCTTAAACATACAC
CACTATACTGGGAAGTCAAACTGAAGAGTTTATTATCCGCGAAAATTTCACATTTGCTTC
ATTGCTTTTTTATATTCACTATTGTATGTTTAGTTGTTGCATCCGCGTATTAAGATTTAT
TCACAGCAGTATTACTGACGTGTGGGGCACACAAGTATCATGAGTGTGGTGTACTTGATA
ATAATGGCACCTCACAGTAAATATGCGACCCCCACCCACACAATCACAATATGTTCCATT
TACAATGAATATACGTGTGTTGCGATGTAAGCGAGAAAT
| Pfam |
Collagen (IPR008160) - T[68-111] 5.2E-7 - T[168-219] 6.8E-8 |
| SMART |
C1q_dom (IPR001073) - T[428-561] 1.7E-19 |
| ProSiteProfiles |
C1q_dom (IPR001073) - T[430-564] 29.368 |
| Gene3D |
Tumour_necrosis_fac-like_dom (IPR008983) - T[431-565] 9.6E-36 |
| SUPERFAMILY |
Tumour_necrosis_fac-like_dom (IPR008983) - T[434-558] 7.02E-29 |
| Pfam |
C1q_dom (IPR001073) - T[436-556] 1.5E-26 |
| PRINTS |
C1q_dom (IPR001073) - T[445-471] 2.2E-12 - T[472-491] 2.2E-12 - T[517-538] 2.2E-12 - T[549-559] 2.2E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COLA1_HUMAN | 39.944 % | 118 | 1.45E-27 |
| OTOL1_HUMAN | 34.634 % | 125 | 1.32E-30 |
| CO4A1_HUMAN | 38.389 % | 111 | 2.17E-25 |
