- Transcript 'KH2012:KH.C1.1098.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1098.v1.R.ND1-1
Possible name(s)
HOXA2; HOXB2; HOXD3
Gene model
Location
KhC1 [9,882,041 / 9,890,576]
Amino acid sequence
Length: 661
>KH.C1.1098.v1.R.ND1-1
VRKDVSQDPEMIRETGFINSQPTFAECLNIVSSGIEDNASDVYRKSPIAAAFDRVQQKEE
TIADSTGSSLHSDCSPTSSRPVSLAFSPISTVSNSPRGKMGFVGPQNNSTVPCASTSATS
QSHHYQQSHMSSEYIQGSNFRPHNPPYAPRIQEPTHFDPRFSYRPQFDAPHSAYEEPQDH
GAFTLAPPDPPYRGIPSYPTAHVYPVDPFLQYQRSDYDVIRDEQCPDFPWMREKKSGEKT
SEGRIRPAGASRRLRTAYTNTQLLELEKEFHYNKYLCRPRRIEIATLLDLTERQVKVWFQ
NRRMKHKRQQLQQSQKDNDDSDVTSADEKNDVKETGSDVESDKNDDVTSLEASESGNGKS
RHSSSDDVTDDESKVAVPSSPVVKREKYKKSEKKFENIQCGTESAKSSVHDAAVSENVKS
EEVLSPKDETVDDVFNTSQTSHVTTSVTTRCHLHMKCSVDHRNFDNNWQHSVNESTKTAD
QAVTCTHPMNMEHSFPQATFMQRHHTTTANGMYKPLGVITQQDEWHSHTLQGKTHNNEYA
YTTQHKHEVPHPTYPPWKPPPQPITHNYHSKPFPLFDSNVNSYNYNNGFDSSFRPSKYRP
FIPDNGYSPTHDVNRQQIPHPEWKAPMGKYPKPYTPQYESHGVNISQTAGLLSNAQKLLD
L
Nucleotide sequence
Length: 2,043
>KH2012:KH.C1.1098.v1.R.ND1-1
AGTTAGGAAAGATGTGAGCCAGGATCCAGAGATGATTCGCGAGACTGGGTTCATCAATTC
GCAACCTACGTTCGCAGAGTGCCTTAATATTGTAAGTTCTGGTATAGAGGACAATGCTTC
TGACGTTTATCGAAAGTCGCCGATTGCAGCCGCGTTTGATCGCGTACAACAGAAGGAAGA
GACAATAGCAGATTCCACAGGCAGCAGCTTGCACAGCGACTGCAGCCCGACGTCTTCGCG
ACCAGTGTCGCTCGCCTTCTCACCGATATCGACGGTTTCGAACTCGCCCCGCGGGAAAAT
GGGCTTCGTCGGCCCGCAGAATAACTCAACAGTTCCGTGCGCTTCAACTTCAGCCACAAG
CCAAAGTCATCACTACCAACAAAGTCATATGTCATCGGAATATATTCAGGGTTCTAACTT
TAGACCCCATAACCCACCCTATGCACCAAGGATACAGGAACCTACCCACTTCGACCCCAG
ATTTAGCTACCGGCCCCAATTCGACGCCCCTCACAGTGCATACGAAGAACCCCAGGATCA
CGGAGCGTTTACGTTAGCCCCACCTGACCCACCCTACAGGGGAATCCCCTCTTACCCCAC
AGCTCATGTGTACCCAGTGGATCCATTCTTGCAATATCAAAGAAGTGATTATGACGTAAT
AAGAGACGAACAATGCCCGGATTTTCCATGGATGAGAGAAAAGAAATCTGGGGAAAAAAC
GTCAGAAGGAAGAATTCGGCCCGCGGGCGCATCCAGGAGACTACGGACTGCTTACACCAA
CACCCAACTGCTGGAACTAGAGAAGGAGTTTCATTATAACAAATACCTTTGCCGACCAAG
AAGAATTGAAATTGCGACCCTGCTCGACCTGACTGAGAGACAGGTCAAAGTTTGGTTTCA
GAACCGTCGAATGAAACACAAACGTCAACAATTACAACAATCACAAAAAGACAATGACGA
TTCTGACGTAACAAGCGCCGACGAAAAAAATGACGTCAAAGAAACCGGTAGTGACGTCGA
GTCGGATAAAAACGATGATGTCACTTCCCTTGAAGCATCGGAGAGTGGAAATGGCAAATC
ACGTCATTCTTCAAGTGATGACGTAACTGATGACGAAAGCAAGGTAGCTGTCCCTTCCTC
CCCAGTCGTTAAAAGAGAAAAATACAAAAAGTCGGAAAAGAAATTTGAAAATATTCAATG
CGGTACTGAGAGTGCCAAGTCATCGGTGCATGACGCTGCAGTTTCCGAAAATGTCAAAAG
CGAAGAAGTATTAAGTCCCAAAGACGAGACAGTTGATGACGTGTTTAATACGTCACAAAC
CTCCCACGTCACGACCAGTGTTACCACACGTTGTCATCTGCACATGAAGTGCAGTGTTGA
CCACAGAAATTTTGACAATAACTGGCAACACTCTGTGAATGAAAGCACAAAGACAGCAGA
CCAAGCAGTCACATGCACACATCCCATGAACATGGAACACTCCTTTCCTCAAGCAACGTT
CATGCAGCGCCACCATACGACCACTGCCAACGGAATGTATAAACCGCTAGGTGTCATAAC
GCAGCAGGACGAATGGCATAGCCACACACTGCAAGGCAAGACACATAACAATGAATACGC
TTACACCACTCAGCATAAACATGAAGTGCCCCATCCCACCTACCCCCCATGGAAACCCCC
ACCCCAACCCATCACCCATAACTATCATTCAAAACCCTTCCCTTTATTCGATAGCAACGT
AAACTCTTACAACTACAACAACGGTTTCGACTCCAGCTTTCGCCCAAGTAAATACCGACC
CTTCATTCCCGATAACGGGTATTCCCCAACTCATGACGTAAACCGGCAGCAAATCCCTCA
CCCCGAATGGAAAGCCCCTATGGGGAAGTACCCCAAACCGTACACCCCTCAATATGAGAG
CCACGGTGTTAACATATCGCAAACAGCTGGCTTACTGAGCAACGCTCAGAAACTGCTGGA
TTTGTAATTTATATCATTTGTACTAATCGTTGTGTGACGTCAGCAATAAAAGCGCTAAAC
ATA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[245-311] 3.98E-25 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[249-309] 21.33 |
| SMART |
Homeobox_dom (IPR001356) - T[251-313] 1.2E-27 |
| CDD |
Homeobox_dom (IPR001356) - T[252-310] 9.95385E-25 |
| Pfam |
Homeobox_dom (IPR001356) - T[252-308] 3.5E-21 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[273-284] 3.9E-7 - T[288-298] 3.9E-7 - T[298-307] 3.9E-7 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[284-307] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXD3_HUMAN | 56.989 % | 124 | 2.51E-30 |
| HXB2_HUMAN | 52.632 % | 141 | 4.34E-37 |
| HXA2_HUMAN | 91.935 % | 130 | 4.24E-33 |
