- Transcript 'Phfumi.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C1.1045.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1045.v1.A.SL1-1
Possible name(s)
CPN2; LGR5; LRRC15
Gene model
Location
KhC1 [1,815,469 / 1,820,754]
Amino acid sequence
Length: 730
>KH.C1.1045.v1.A.SL1-1
LLNKITMAMQRWCVFVVLLHYTSARVVRPNMKTQECLKTSHYLRDPNEYVCKDLGLCYKH
YCRAPARKCVGCDYTRKPSCLLVGNEAQNISSQLNKKPKPRIRNPEYENCTNCIHGVLRI
KAGDRECLGFLAAVPNAKQYRLVVVTAASCVTRFKVTCAVPNTANNESRSIHGSAACFGN
PDTRIDQVSKGFRSYCATITNNGSTVTVPLNNEFVLIPRQYIECGDCLYDIAVIKLRANH
LRDLKLTSENAHVLQTISKPKKIKKTPFFVGYNIPNSPDINWDSQRIFFSTEEKFLSQKM
CMDINSTDIGEYIVNGSPVLYKLNSSSVATNATFQTAHTVAGVVSYVRPLGSTGVTRASV
VRITEQLVDFIWRWLKVKWKENECSQPDDRLNAKYDCYPSFKDNGGNNSLCLCARGWKNE
RGHCKTATSEGLRNCVWDKTEKMMTCTGGIMSESALSSPVEMGLDTTVLPGSTKHLSFLS
HEIKDGVELQEVLRHLPNLKSLEVEHANLQTLSISTFQGNPLLQRLSLSNNNLSRINEDL
LIRQRNLLSLNLANNRLHYIPRRVFRKQLKLRELNARGNEIERIATRALRKNTKLQRIRL
SRNRITTIPPTLFITNTDLREVYLDYNHITEISGTTFRNCHRLKRLNVEGNQLTNIPREL
FLSNIRLTVVNLGKNRISNLPHDLFDNQLYLEEVWLNENPELPSTLTLGAYLSQASINRL
KHLLEVYSKP
Nucleotide sequence
Length: 2,408
>KH2012:KH.C1.1045.v1.A.SL1-1
GTGCGGGTAGTTAATGCATTTGTAATGCGCATATGAATATCGATGAATTATCTGTAATGG
AAAACTTCGACAATGTGTAGTAGATTGTAGCTTTTGAATAAGATTACAATGGCAATGCAA
CGATGGTGTGTGTTCGTTGTGTTGCTGCATTACACAAGTGCACGAGTGGTCAGACCGAAC
ATGAAGACGCAGGAATGCCTAAAGACTTCTCACTATTTGCGGGACCCAAATGAATACGTT
TGCAAGGACTTAGGATTGTGTTATAAGCATTACTGTAGGGCCCCTGCAAGGAAATGCGTT
GGTTGCGATTATACTCGAAAACCATCATGCCTTCTTGTTGGTAATGAGGCGCAAAATATT
TCATCACAATTGAACAAAAAGCCAAAACCGCGGATAAGAAATCCTGAATACGAAAATTGC
ACGAACTGCATACACGGTGTACTACGAATCAAAGCCGGCGACCGGGAATGCCTTGGATTT
CTGGCAGCTGTTCCAAACGCGAAGCAATACAGACTCGTTGTGGTTACCGCTGCTAGCTGT
GTTACCCGTTTTAAAGTGACTTGTGCGGTTCCTAATACAGCAAACAACGAATCGCGTTCA
ATCCATGGGTCTGCGGCTTGCTTCGGAAATCCGGACACCCGGATCGATCAGGTCTCTAAA
GGGTTTAGATCCTACTGCGCTACTATCACTAATAACGGTTCAACGGTGACAGTACCTTTG
AATAATGAATTCGTTCTCATACCACGTCAGTACATTGAATGTGGCGATTGCTTATACGAC
ATTGCTGTAATCAAACTGCGCGCAAACCATCTTAGAGACTTGAAACTGACTTCAGAAAAC
GCCCATGTTTTACAGACGATCAGTAAGCCAAAAAAGATCAAAAAAACTCCATTTTTTGTT
GGTTACAATATTCCGAATTCGCCCGATATTAACTGGGACAGCCAACGTATATTCTTCTCG
ACAGAAGAGAAATTTCTAAGCCAGAAAATGTGTATGGACATTAATTCAACCGACATAGGC
GAGTACATAGTAAATGGAAGTCCTGTACTGTACAAGCTAAACTCAAGTTCTGTTGCAACC
AACGCTACATTCCAAACAGCGCATACTGTAGCTGGTGTCGTATCCTATGTTCGACCATTA
GGCAGCACTGGTGTAACAAGGGCATCGGTAGTGAGAATAACAGAGCAACTGGTCGATTTT
ATTTGGAGATGGCTCAAAGTTAAATGGAAAGAGAACGAATGCAGCCAACCGGATGACAGA
TTAAATGCTAAATACGATTGTTATCCGTCGTTTAAAGATAATGGTGGAAATAATTCTTTG
TGTCTATGTGCTCGGGGTTGGAAAAATGAAAGGGGCCACTGCAAAACAGCAACATCAGAA
GGGCTGCGCAACTGTGTTTGGGACAAAACAGAGAAGATGATGACGTGTACAGGAGGCATT
ATGAGCGAATCGGCATTGAGTAGCCCGGTAGAGATGGGACTAGATACAACAGTTTTGCCA
GGGTCTACAAAACATCTAAGTTTTCTATCGCATGAAATTAAAGACGGGGTGGAATTGCAA
GAAGTGCTGAGACATTTACCAAACCTTAAAAGCTTGGAAGTTGAGCATGCGAATTTACAG
ACCCTATCAATTTCAACGTTCCAAGGCAACCCATTACTGCAAAGGTTGTCTCTTAGCAAC
AACAATTTATCAAGAATAAACGAAGACTTGTTGATTAGACAACGAAACTTATTATCTCTG
AATCTGGCAAATAACCGGCTACACTACATCCCGCGAAGGGTGTTCCGAAAACAACTTAAA
CTTAGAGAATTAAACGCAAGGGGAAATGAAATTGAGCGTATTGCAACTCGAGCACTTCGT
AAAAACACCAAGTTACAAAGGATACGTCTAAGCCGTAACAGAATCACCACCATCCCACCA
ACCCTGTTTATAACCAACACCGACTTACGGGAAGTCTACTTAGACTATAACCACATTACA
GAGATATCTGGAACCACTTTCCGCAACTGTCATCGGTTAAAGAGACTCAACGTAGAAGGA
AACCAGCTAACCAACATCCCAAGAGAACTTTTCCTCTCGAATATAAGACTCACTGTAGTT
AACTTGGGTAAAAATAGAATCTCAAATCTCCCACACGATTTGTTTGATAACCAGTTATAT
CTTGAAGAAGTCTGGCTGAATGAAAACCCCGAGCTACCCTCGACTTTAACGTTAGGCGCC
TATTTGAGTCAGGCTTCAATAAATAGGCTTAAACATCTACTAGAAGTTTACAGCAAGCCC
TAACCCACAGTTTAATTGAAATCTATTCTAATCAGCATATTTTGTTATTTGCTCGTTATT
CAATGTGTTTGTGTGTTTTACTAAAAGTGCCACAATTTTCTAAACAGCAATAAATTTCGC
AATTGTAA
| Gene3D |
LRR_dom_sf (IPR032675) - T[407-599] 7.0E-23 - T[600-727] 3.7E-22 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[496-519] 2.4 - T[521-543] 170.0 - T[545-567] 3.0 - T[570-591] 320.0 - T[593-615] 9.9 - T[617-639] 22.0 - T[640-663] 7.5 - T[665-687] 20.0 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[497-557] 7.0E-9 - T[594-653] 9.4E-13 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[498-519] 4.539 - T[522-543] 6.842 - T[546-567] 6.672 - T[570-591] 6.049 - T[594-615] 6.996 - T[618-639] 6.873 - T[642-663] 7.566 - T[666-687] 6.218 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CPN2_HUMAN | 32.632 % | 97.1 | 5.88E-21 |
| LRC15_HUMAN | 32.195 % | 97.4 | 4.91E-21 |
| LGR5_HUMAN | 34.973 % | 96.7 | 1.55E-20 |
