- Region 'REG00000345' >
- Transcript 'KH2012:KH.C1.1016.v4...'
Transcript Model
Transcript Id
KH2012:KH.C1.1016.v4.A.SL1-1
Possible name(s)
NR5A1; NR6A1; RXRG
Gene model
Location
KhC1 [4,692,775 / 4,707,332]
Amino acid sequence
Length: 631
>KH.C1.1016.v4.A.SL1-1
KSNTTKMFVFGGGNSNIGVPMSIYDENKRFGDDGKEVKSCLICGDRATGLHYGIISCEGC
KGFFKRSICNKRVYRCTRSKNCVMSRKQRNRCQFCRLLKCLQMGMNRKAIREDGMPGGRN
KSIGPVQISDEEIERILSGKDFEEEAAREEQQQQQQQMNLEQANNPYASMGHSSYMPLFS
PGSGPQYPTNMISSSTGSPPLNNGMRNSSTSSSIPMNARSLMAGANSQLGFVPSMPGVHV
RENSFYPGLPPYQLPHVNRYSMQQGQQIHDRSPESASELTSTTLVEQLVLAEDASFLVSI
GPDHGFNDVTISKDQLFSILCKVADEMLYRQIVWIKKLPFFETISIKDHTTLLSTTWAEI
ILLAALCVHEDQLFGDLADITSKYLPDNDELSRFTDYEMEILERVTYLYQKFSHLKIDRE
EYVIMKVINFLNQDIKGLQEVERVEEINKRYWYACQRYTELRAMERNAGRSDASSNAAAS
GASRFRDLMLCLPEIRYVAGKMLNTDVTKLPLLFKAILHTCKLQKLQSSQLIGRHQNDAG
GTSTPPSPTSSPTQPPRTVRDDDKMAAAASMLDLTSDPSRLNHEQSVRLHGSGSVGPPSS
ASTVSPGAHQTSSSPRSSHGRSSRDSAADSS
Nucleotide sequence
Length: 3,837
>KH2012:KH.C1.1016.v4.A.SL1-1
AGATTTAATATTCGTGACGTCTGTTGTATAAAATGACCATTTGCTAGAAGTCAAATACAA
CCAAGATGTTTGTTTTTGGCGGTGGAAATTCAAACATCGGCGTACCTATGTCTATCTACG
ATGAGAACAAACGTTTTGGAGATGATGGAAAAGAGGTGAAGAGTTGTCTCATCTGCGGAG
ATCGAGCCACTGGACTTCACTACGGCATCATATCATGCGAGGGATGTAAAGGTTTCTTCA
AACGCAGCATCTGCAACAAACGAGTGTACCGATGCACAAGAAGCAAGAACTGTGTCATGT
CAAGAAAACAACGGAACCGTTGTCAGTTCTGCCGTCTACTCAAATGCCTTCAAATGGGCA
TGAACCGAAAAGCGATCCGGGAAGATGGCATGCCCGGTGGAAGGAATAAAAGCATTGGAC
CAGTTCAGATATCAGATGAGGAAATCGAACGTATTCTGTCCGGAAAAGACTTTGAAGAGG
AAGCTGCTCGAGAGGAGCAACAGCAGCAACAACAACAGATGAACCTCGAGCAAGCGAACA
ACCCATATGCTTCAATGGGCCACTCAAGTTACATGCCGCTCTTCTCGCCGGGATCTGGGC
CTCAATACCCGACCAACATGATCTCATCAAGTACGGGTTCACCGCCACTAAACAACGGTA
TGCGGAATTCATCAACTTCATCCTCAATTCCAATGAACGCTCGATCTTTAATGGCTGGTG
CAAACTCACAGCTCGGATTTGTACCTTCGATGCCAGGCGTGCATGTGAGAGAAAACAGCT
TCTACCCAGGATTGCCACCATACCAACTACCCCACGTGAACCGATACTCGATGCAACAGG
GTCAGCAGATACATGACCGATCTCCTGAATCAGCATCCGAACTTACAAGCACGACATTAG
TTGAACAGCTGGTGTTGGCTGAAGACGCATCGTTTCTTGTCTCTATTGGACCGGATCATG
GTTTCAATGACGTCACGATTAGCAAGGATCAACTCTTCAGTATTCTATGCAAGGTAGCGG
ATGAAATGCTATATCGTCAGATTGTTTGGATCAAGAAGTTGCCCTTTTTTGAAACCATTT
CCATTAAAGATCACACAACTCTGTTGAGTACGACATGGGCCGAGATTATATTACTTGCTG
CACTGTGCGTGCATGAAGACCAGTTGTTTGGCGATCTAGCTGATATTACGTCCAAGTATT
TGCCCGACAACGATGAGCTGTCCAGATTCACTGATTACGAGATGGAAATATTGGAAAGAG
TAACCTACCTCTACCAAAAGTTCTCGCATCTGAAAATAGACAGAGAGGAATATGTTATCA
TGAAAGTCATCAATTTCTTAAACCAAGACATCAAAGGTTTACAAGAAGTAGAACGAGTGG
AAGAAATTAACAAGAGATATTGGTATGCTTGTCAACGGTACACTGAACTCCGTGCTATGG
AGAGGAACGCGGGAAGATCAGATGCCTCATCCAACGCTGCAGCATCCGGAGCATCGAGAT
TCCGGGATCTCATGTTATGTCTTCCAGAGATCAGATACGTGGCAGGGAAGATGCTCAACA
CTGACGTCACTAAACTTCCTCTTTTATTTAAGGCTATTCTTCACACATGCAAACTGCAAA
AGTTACAATCGAGCCAGTTAATTGGACGTCATCAAAATGATGCGGGCGGAACATCCACGC
CTCCCTCTCCAACCTCATCACCAACTCAACCACCACGCACTGTTCGTGACGACGACAAAA
TGGCTGCCGCCGCCTCAATGCTTGATCTCACATCTGACCCTTCGCGTCTCAACCACGAAC
AGTCTGTTCGTCTCCACGGCAGTGGATCAGTCGGCCCACCATCATCAGCCTCGACTGTCT
CACCCGGCGCCCACCAAACATCGAGTTCTCCACGTTCAAGTCACGGCCGCAGCAGTCGCG
ACAGTGCCGCTGATTCCTCATAAACCCAAGCATGCCTCATGCTATGCAAGCAGCAACTCA
CCGACACAACATATCGCACCCAAAGCACAGCATGTCAATCTTTCAATGCCTTACTGTGAC
CTCAAGCAAGAAATCCGGTCTTCCTGGCATCAAGCTGCTTTGCAGACTACCTTGAACCTC
GTGCCTCGCTTTTTACAGAAAACAAAAACCCCTTTTTCTGCTTCAGTTTTGTACTAAAGT
CGACCAAAGAATTTTTAAATATGAATTACTTCATCTCGCCTCTTGACGTATATATGACGT
CATAAATCGCCTTGGTACTGTGCCTATTTCCTTCTGCATCTACGGCGTCTGCGTAAATAC
TCCTACCAAAAAGTCAACTACTTCAGGGATTTTTCATTTGACCATTCCTTTTCCCTCACA
CGTACTAATGATGCGCCAGTGTAATTTGCTCGCACCAAACGATCCCTTGTTTATTCGCCG
TTTTCTTCAGGAAGCTTATAATTTTGACTGTGCCCCTTTCTTTCTTCACGACGCCACCAG
GTTACTGCGTCCCAGTGTTGACCGAATAGCAATAACCGCCCATGAATATCAATAATATTT
CCCCGAAGTTTTCCTTCCGCAAATGACTGAATTCACCAACCGCTGCACCTCTCGTATTAT
GAGGTGCCATTTTCAGTGAGCGACGTTTTTTTGTTAAATTTTCGTTGAAAATGCACTGCT
CACCATGCCTATTTTTGCCTGTATATATCGCATGTACATATACCGGTTTCAATGACGCGT
ACAATCACGTACCGACGTTCTCTTTTTTGTGAAGTTTCTAATTTTCTATCCTTACACACC
CGATGAATTTATCGGCGAGTGAATTCCCACGCTTTGTAATGCAGTGTCCGAAACACCCCA
CTATTGCACTAATAAGAGAAATTTTACGCCAGATATATTAAACAATCACCTTTAAACCCC
CAATAAAACCAAGTGTGTAAATTTTTGTTTTTTTTTCAATATTTTCTTCAGCCGTAAAAC
CTCAGTTCTTAAATACGCCGCTGTGAACGCCTTTACTCTTTTGACTTTACGTCACAATCT
AACTTTGTTGCGACAACAATTTCACCAAAGCCAAGTTGTAATGCGTCCGGCACCTCTGTT
ATATACCCTCGTATCACCCGACCGTCAATTGTACGAGCAAACACTTCGTTTTCGTCCTTT
ACCCGCGTACTTTCCTGAAGTAACCGTTTGTGTATTTTCAGCAAGCCATTGTATGTTGTC
ATACCTCGTTATTGCATCATAAAGCGCATTGTGTTCTCATTTACAGCTAACGCACGACAC
CCATGAGCACCATCAACTTCCGTGCACTATTAGCTCAGGTTTATGTTTGGAAAGTATCGC
GCTGTTCTTCGTCTTTTCTCCGTTTTTTTGCGCATAACCAATCAACATTGTCCAAGTTAA
TTTATCCAATATACCCCAATATACCTCAGTAAGCAAATCGCCACCATATCTCCATTTTGC
AACCGAATCGAACACAACTAAACCAAATTCTCTAAAATCACGTTTTAATTGTCGCGATTT
TGTTGCAAAATGGAGACCAAAAATTTCGGCAAACTTCTACGTTTCTTTTTGTTTGTGTTT
ATTCAGTAAAGTGTTGCCGCGTTATACCTCAATCTTGGGCGAGCGTAGTCTTCTTATAGA
GCCCGCTATTATGTCGTAACAATACCGCATTGTGGTTTTAATCGGAAATACAGTTGTGGT
GTGACGTGTGTGTTCTATACCTGTGTGTGTGTGCTCAAATTCGCAAAGTGTGTACAATAT
TTATAGGGTAGCGTTGAACCACGCACACGTATGATATTAATTATACCTCTCGTCCGTTTA
TTCCGTTATGTTGAGTGAGAATAAAAGAGCGCACACACAATAAATGAATGATTCATT
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[31-137] 6.8E-33 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[37-112] 20.178 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[37-108] 4.5E-34 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[39-107] 1.1E-27 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[40-56] 5.5E-17 - T[56-71] 5.5E-17 - T[89-97] 5.5E-17 - T[97-105] 5.5E-17 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[40-66] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[101-111] 5.0E-16 - T[323-344] 5.0E-16 - T[344-360] 5.0E-16 - T[415-430] 5.0E-16 - T[487-504] 5.0E-16 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[110-121] 5.24E-39 - T[260-519] 5.24E-39 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[317-501] 8.8E-15 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[322-499] 8.8E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR6A1_HUMAN | 51.815 % | 480 | 3.53E-165 |
| RXRG_HUMAN | 43.151 % | 122 | 6.51E-30 |
| STF1_HUMAN | 24.738 % | 131 | 8.41E-33 |