- Molecular Tool 'Tbx6.b MO (Tokuoka 2018)' >
- Transcript 'KH2012:KH.S544.3.v1....' >
- Transcript 'KH2012:KH.L152.2.v1....' >
- Region 'REG00000198' >
- Transcript 'KH2012:KH.C1.1016.v2...'
Transcript Model
Transcript Id
KH2012:KH.C1.1016.v2.A.SL2-1
Possible name(s)
NR5A1; NR6A1; RXRG
Gene model
Location
KhC1 [4,692,775 / 4,714,088]
Amino acid sequence
Length: 678
>KH.C1.1016.v2.A.SL2-1
SYLNKAFRTFEIFIAHEMDIAIFNSGYNYPDMNGVDLSRYTGWPSQQPHPSNMGRGGMNN
MDHNSPQVNSELNNNAYTDDGKEVKSCLICGDRATGLHYGIISCEGCKGFFKRSICNKRV
YRCTRSKNCVMSRKQRNRCQFCRLLKCLQMGMNRKAIREDGMPGGRNKSIGPVQISDEEI
ERILSGKDFEEEAAREEQQQQQQQMNLEQANNPYASMGHSSYMPLFSPGSGPQYPTNMIS
SSTGSPPLNNGMRNSSTSSSIPMNARSLMAGANSQLGFVPSMPGVHVRENSFYPGLPPYQ
LPHVNRYSMQQGQQIHDRSPESASELTSTTLVEQLVLAEDASFLVSIGPDHGFNDVTISK
DQLFSILCKVADEMLYRQIVWIKKLPFFETISIKDHTTLLSTTWAEIILLAALCVHEDQL
FGDLADITSKYLPDNDELSRFTDYEMEILERVTYLYQKFSHLKIDREEYVIMKVINFLNQ
DIKGLQEVERVEEINKRYWYACQRYTELRAMERNAGRSDASSNAAASGASRFRDLMLCLP
EIRYVAGKMLNTDVTKLPLLFKAILHTCKLQKLQSSQLIGRHQNDAGGTSTPPSPTSSPT
QPPRTVRDDDKMAAAASMLDLTSDPSRLNHEQSVRLHGSGSVGPPSSASTVSPGAHQTSS
SPRSSHGRSSRDSAADSS
Nucleotide sequence
Length: 4,023
>KH2012:KH.C1.1016.v2.A.SL2-1
TTACAGAAAACAAAAGTAATAGGCTCAACGCTGGCTTAAATGTAAACCTAAATATTCATA
CATTCCTCAACATCTACCTCTGCATTAAATGAAGTTACCTCAACAAAGCATTCAGAACAT
TTGAAATTTTCATTGCACATGAGATGGACATTGCCATATTCAACTCCGGCTACAATTATC
CTGACATGAATGGAGTCGACTTGTCAAGATATACAGGATGGCCATCCCAGCAACCTCATC
CAAGCAACATGGGAAGAGGGGGGATGAACAATATGGACCACAATTCACCACAGGTCAACA
GTGAACTTAACAATAATGCTTATACTGATGATGGAAAAGAGGTGAAGAGTTGTCTCATCT
GCGGAGATCGAGCCACTGGACTTCACTACGGCATCATATCATGCGAGGGATGTAAAGGTT
TCTTCAAACGCAGCATCTGCAACAAACGAGTGTACCGATGCACAAGAAGCAAGAACTGTG
TCATGTCAAGAAAACAACGGAACCGTTGTCAGTTCTGCCGTCTACTCAAATGCCTTCAAA
TGGGCATGAACCGAAAAGCGATCCGGGAAGATGGCATGCCCGGTGGAAGGAATAAAAGCA
TTGGACCAGTTCAGATATCAGATGAGGAAATCGAACGTATTCTGTCCGGAAAAGACTTTG
AAGAGGAAGCTGCTCGAGAGGAGCAACAGCAGCAACAACAACAGATGAACCTCGAGCAAG
CGAACAACCCATATGCTTCAATGGGCCACTCAAGTTACATGCCGCTCTTCTCGCCGGGAT
CTGGGCCTCAATACCCGACCAACATGATCTCATCAAGTACGGGTTCACCGCCACTAAACA
ACGGTATGCGGAATTCATCAACTTCATCCTCAATTCCAATGAACGCTCGATCTTTAATGG
CTGGTGCAAACTCACAGCTCGGATTTGTACCTTCGATGCCAGGCGTGCATGTGAGAGAAA
ACAGCTTCTACCCAGGATTGCCACCATACCAACTACCCCACGTGAACCGATACTCGATGC
AACAGGGTCAGCAGATACATGACCGATCTCCTGAATCAGCATCCGAACTTACAAGCACGA
CATTAGTTGAACAGCTGGTGTTGGCTGAAGACGCATCGTTTCTTGTCTCTATTGGACCGG
ATCATGGTTTCAATGACGTCACGATTAGCAAGGATCAACTCTTCAGTATTCTATGCAAGG
TAGCGGATGAAATGCTATATCGTCAGATTGTTTGGATCAAGAAGTTGCCCTTTTTTGAAA
CCATTTCCATTAAAGATCACACAACTCTGTTGAGTACGACATGGGCCGAGATTATATTAC
TTGCTGCACTGTGCGTGCATGAAGACCAGTTGTTTGGCGATCTAGCTGATATTACGTCCA
AGTATTTGCCCGACAACGATGAGCTGTCCAGATTCACTGATTACGAGATGGAAATATTGG
AAAGAGTAACCTACCTCTACCAAAAGTTCTCGCATCTGAAAATAGACAGAGAGGAATATG
TTATCATGAAAGTCATCAATTTCTTAAACCAAGACATCAAAGGTTTACAAGAAGTAGAAC
GAGTGGAAGAAATTAACAAGAGATATTGGTATGCTTGTCAACGGTACACTGAACTCCGTG
CTATGGAGAGGAACGCGGGAAGATCAGATGCCTCATCCAACGCTGCAGCATCCGGAGCAT
CGAGATTCCGGGATCTCATGTTATGTCTTCCAGAGATCAGATACGTGGCAGGGAAGATGC
TCAACACTGACGTCACTAAACTTCCTCTTTTATTTAAGGCTATTCTTCACACATGCAAAC
TGCAAAAGTTACAATCGAGCCAGTTAATTGGACGTCATCAAAATGATGCGGGCGGAACAT
CCACGCCTCCCTCTCCAACCTCATCACCAACTCAACCACCACGCACTGTTCGTGACGACG
ACAAAATGGCTGCCGCCGCCTCAATGCTTGATCTCACATCTGACCCTTCGCGTCTCAACC
ACGAACAGTCTGTTCGTCTCCACGGCAGTGGATCAGTCGGCCCACCATCATCAGCCTCGA
CTGTCTCACCCGGCGCCCACCAAACATCGAGTTCTCCACGTTCAAGTCACGGCCGCAGCA
GTCGCGACAGTGCCGCTGATTCCTCATAAACCCAAGCATGCCTCATGCTATGCAAGCAGC
AACTCACCGACACAACATATCGCACCCAAAGCACAGCATGTCAATCTTTCAATGCCTTAC
TGTGACCTCAAGCAAGAAATCCGGTCTTCCTGGCATCAAGCTGCTTTGCAGACTACCTTG
AACCTCGTGCCTCGCTTTTTACAGAAAACAAAAACCCCTTTTTCTGCTTCAGTTTTGTAC
TAAAGTCGACCAAAGAATTTTTAAATATGAATTACTTCATCTCGCCTCTTGACGTATATA
TGACGTCATAAATCGCCTTGGTACTGTGCCTATTTCCTTCTGCATCTACGGCGTCTGCGT
AAATACTCCTACCAAAAAGTCAACTACTTCAGGGATTTTTCATTTGACCATTCCTTTTCC
CTCACACGTACTAATGATGCGCCAGTGTAATTTGCTCGCACCAAACGATCCCTTGTTTAT
TCGCCGTTTTCTTCAGGAAGCTTATAATTTTGACTGTGCCCCTTTCTTTCTTCACGACGC
CACCAGGTTACTGCGTCCCAGTGTTGACCGAATAGCAATAACCGCCCATGAATATCAATA
ATATTTCCCCGAAGTTTTCCTTCCGCAAATGACTGAATTCACCAACCGCTGCACCTCTCG
TATTATGAGGTGCCATTTTCAGTGAGCGACGTTTTTTTGTTAAATTTTCGTTGAAAATGC
ACTGCTCACCATGCCTATTTTTGCCTGTATATATCGCATGTACATATACCGGTTTCAATG
ACGCGTACAATCACGTACCGACGTTCTCTTTTTTGTGAAGTTTCTAATTTTCTATCCTTA
CACACCCGATGAATTTATCGGCGAGTGAATTCCCACGCTTTGTAATGCAGTGTCCGAAAC
ACCCCACTATTGCACTAATAAGAGAAATTTTACGCCAGATATATTAAACAATCACCTTTA
AACCCCCAATAAAACCAAGTGTGTAAATTTTTGTTTTTTTTTCAATATTTTCTTCAGCCG
TAAAACCTCAGTTCTTAAATACGCCGCTGTGAACGCCTTTACTCTTTTGACTTTACGTCA
CAATCTAACTTTGTTGCGACAACAATTTCACCAAAGCCAAGTTGTAATGCGTCCGGCACC
TCTGTTATATACCCTCGTATCACCCGACCGTCAATTGTACGAGCAAACACTTCGTTTTCG
TCCTTTACCCGCGTACTTTCCTGAAGTAACCGTTTGTGTATTTTCAGCAAGCCATTGTAT
GTTGTCATACCTCGTTATTGCATCATAAAGCGCATTGTGTTCTCATTTACAGCTAACGCA
CGACACCCATGAGCACCATCAACTTCCGTGCACTATTAGCTCAGGTTTATGTTTGGAAAG
TATCGCGCTGTTCTTCGTCTTTTCTCCGTTTTTTTGCGCATAACCAATCAACATTGTCCA
AGTTAATTTATCCAATATACCCCAATATACCTCAGTAAGCAAATCGCCACCATATCTCCA
TTTTGCAACCGAATCGAACACAACTAAACCAAATTCTCTAAAATCACGTTTTAATTGTCG
CGATTTTGTTGCAAAATGGAGACCAAAAATTTCGGCAAACTTCTACGTTTCTTTTTGTTT
GTGTTTATTCAGTAAAGTGTTGCCGCGTTATACCTCAATCTTGGGCGAGCGTAGTCTTCT
TATAGAGCCCGCTATTATGTCGTAACAATACCGCATTGTGGTTTTAATCGGAAATACAGT
TGTGGTGTGACGTGTGTGTTCTATACCTGTGTGTGTGTGCTCAAATTCGCAAAGTGTGTA
CAATATTTATAGGGTAGCGTTGAACCACGCACACGTATGATATTAATTATACCTCTCGTC
CGTTTATTCCGTTATGTTGAGTGAGAATAAAAGAGCGCACACACAATAAATGAATGATTC
ATT
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[77-184] 8.3E-33 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[84-155] 4.5E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[84-159] 20.178 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[86-154] 1.3E-27 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[87-103] 7.2E-17 - T[103-118] 7.2E-17 - T[136-144] 7.2E-17 - T[144-152] 7.2E-17 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[87-113] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[148-158] 7.0E-16 - T[370-391] 7.0E-16 - T[391-407] 7.0E-16 - T[462-477] 7.0E-16 - T[534-551] 7.0E-16 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[157-168] 6.42E-39 - T[307-566] 6.42E-39 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[364-548] 1.0E-14 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[369-546] 8.8E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR6A1_HUMAN | 51.71 % | 480 | 2.72E-164 |
| RXRG_HUMAN | 40 % | 124 | 2.46E-30 |
| STF1_HUMAN | 24.694 % | 133 | 2.78E-33 |