Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C1.1011.v1.A.SL1-1

Possible name(s)

RAB1A; RAB1B; RAB35

Gene model

KH2012:KH.C1.1011

Location

KhC1 [336,404 / 342,343]

Sequences

Amino acid sequence

Length: 212

>KH.C1.1011.v1.A.SL1-1
RRRSCYLAEMAREYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTIE
IGGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVQSAESFVNVKRWLHEIEQNCD
SVNRILVGNKDDCAEKKVVETADAKKFSDQINITLFETSAKENKNIEEMFTEITRQVLRT
KQNSQNQSGAGQPDGLKLRDKRNKPKKSSGCC

Nucleotide sequence

Length: 1,588

>KH2012:KH.C1.1011.v1.A.SL1-1
GTTCTAAGGTATAACAAGAAATAGTAGCGCCGTAGGAGTTGTTATTTGGCTGAAATGGCC
AGAGAGTATGACCATCTGTTCAAGCTGCTCATAATTGGGGACAGTGGAGTCGGCAAAAGT
AGTTTGCTTCTAAGATTTGCTGACAATACGTTTTCCGGAAGTTACATAACAACCATTGGT
GTGGACTTCAAAATACGAACAATCGAAATTGGCGGCGAGAAAGTAAAGCTACAAATCTGG
GACACGGCGGGTCAGGAGAGGTTCCGTACAATAACCTCAACTTACTACAGAGGCACGCAT
GGTGTGATAGTGGTGTATGACGTACAAAGTGCTGAGTCTTTTGTCAACGTTAAACGATGG
TTGCATGAAATTGAACAAAACTGCGACAGTGTAAACAGGATTCTTGTTGGAAATAAAGAC
GACTGCGCGGAAAAGAAAGTCGTCGAAACTGCGGATGCTAAAAAGTTTTCCGATCAAATA
AACATTACTTTGTTTGAAACAAGTGCCAAAGAAAATAAGAATATTGAAGAGATGTTCACT
GAGATTACAAGACAAGTCCTGCGTACGAAGCAAAACTCACAAAACCAGTCCGGAGCCGGC
CAGCCCGACGGACTCAAACTTCGAGATAAAAGAAATAAACCAAAGAAGTCGAGCGGATGT
TGTTGATATGATGACTTTACGTCTTCTCGGATCTTACGTCTTCCCTAACTCAGCGATAAC
TCTTCGGAAGACGCTTAAAATGAGCAGCAAGCTCAGTTAAACTTGTATTAAATCGTGAAC
AATATGATTTGTTCTTATTTTTTCATCATTTCATTTAACATTATAAAAACACAAGTTACG
TGTCCCGTCTTCCCCCACTCTACTACAATTATATTTATACATTGGTCAGATTTTCCTATC
CCTACGTTCAGATCTGTCTCTATTGCGAAGTAGTTAGCTAGGATTAATTTTATGCTTGCT
ACTTGGATTCTGCACGAATTAAAAATAGTTTAAAAACCGTTAAAAACCCATTGGTGCCTG
TACTTTATTACAGACAGCAGTTTTTGCTCAGATTTCCCCAAAAAAACAAAGTGCTTCATA
TTCGTGCTTAGTCCTAACAATTATAACGACAATTGAGTTTTGATTCCCGATTTAAAAGTT
TCATATTAATCAGTGTTTCACAATCGAAAATGAATACGTAGCCACCGCATTTACAAAGTT
CTAATATTCCCACATTGGACATCACTGCAAAAGTTTATGATAAAAATGAGAACAAAAATA
CTAACAAAAATACTGTTTAACTAAATATTTTAACTTAACATTCCTATAGCCATATATTTA
ATAAAATAGTCGTAAATTAAACTAAACATGAGTTTGTGTCATTTTTCCAAAAGTTTTTTT
TTTGGACAAAAATTCTGCCAATTCCTTTATCTAGTCTGTCATTTTCAATCTAAACCATAA
TCTAAATACATTTCATGTGATCAAATTTACATTATAGGTGACTACTAATGTCATTTTCAT
TCATTCACTTAAATTTTGCAGTCACTATATTTTGTACTTGCATGGTGTACTGCTAAGTTG
CCATAAGAATAAATACTATTTACTGCAA

InterProScan

SUPERFAMILY	P-loop_NTPase (IPR027417) - T[13-186] 6.3E-62
TIGRFAM	Small_GTP-bd_dom (IPR005225) - T[18-173] 2.2E-33
Pfam	Small_GTPase (IPR001806) - T[19-178] 1.9E-61

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RAB1A_HUMAN	55.024 %	229	5.4E-77
RAB35_HUMAN	75.862 %	300	6.91E-105
RAB1B_HUMAN	56.863 %	234	6.25E-79