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TRANSCRIPT CARD

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  1. Transcript 'Phfumi.CG.MTP2014.S1...' > 
  2. Region 'REG00000626' > 
  3. Transcript 'KH2012:KH.C8.163.v2....' > 
  4. Region 'REG00000333' > 
  5. Transcript 'KH2012:KH.C1.1011.v1...'

Transcript Model

Transcript Id

KH2012:KH.C1.1011.v1.A.SL1-1

Possible name(s)

RAB1A; RAB1B; RAB35

Gene model

KH2012:KH.C1.1011

Location

KhC1 [336,404 / 342,343]

Sequences

Amino acid sequence

Length: 212

>KH.C1.1011.v1.A.SL1-1
RRRSCYLAEMAREYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTIE
IGGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVQSAESFVNVKRWLHEIEQNCD
SVNRILVGNKDDCAEKKVVETADAKKFSDQINITLFETSAKENKNIEEMFTEITRQVLRT
KQNSQNQSGAGQPDGLKLRDKRNKPKKSSGCC

Nucleotide sequence

Length: 1,588

>KH2012:KH.C1.1011.v1.A.SL1-1
GTTCTAAGGTATAACAAGAAATAGTAGCGCCGTAGGAGTTGTTATTTGGCTGAAATGGCC
AGAGAGTATGACCATCTGTTCAAGCTGCTCATAATTGGGGACAGTGGAGTCGGCAAAAGT
AGTTTGCTTCTAAGATTTGCTGACAATACGTTTTCCGGAAGTTACATAACAACCATTGGT
GTGGACTTCAAAATACGAACAATCGAAATTGGCGGCGAGAAAGTAAAGCTACAAATCTGG
GACACGGCGGGTCAGGAGAGGTTCCGTACAATAACCTCAACTTACTACAGAGGCACGCAT
GGTGTGATAGTGGTGTATGACGTACAAAGTGCTGAGTCTTTTGTCAACGTTAAACGATGG
TTGCATGAAATTGAACAAAACTGCGACAGTGTAAACAGGATTCTTGTTGGAAATAAAGAC
GACTGCGCGGAAAAGAAAGTCGTCGAAACTGCGGATGCTAAAAAGTTTTCCGATCAAATA
AACATTACTTTGTTTGAAACAAGTGCCAAAGAAAATAAGAATATTGAAGAGATGTTCACT
GAGATTACAAGACAAGTCCTGCGTACGAAGCAAAACTCACAAAACCAGTCCGGAGCCGGC
CAGCCCGACGGACTCAAACTTCGAGATAAAAGAAATAAACCAAAGAAGTCGAGCGGATGT
TGTTGATATGATGACTTTACGTCTTCTCGGATCTTACGTCTTCCCTAACTCAGCGATAAC
TCTTCGGAAGACGCTTAAAATGAGCAGCAAGCTCAGTTAAACTTGTATTAAATCGTGAAC
AATATGATTTGTTCTTATTTTTTCATCATTTCATTTAACATTATAAAAACACAAGTTACG
TGTCCCGTCTTCCCCCACTCTACTACAATTATATTTATACATTGGTCAGATTTTCCTATC
CCTACGTTCAGATCTGTCTCTATTGCGAAGTAGTTAGCTAGGATTAATTTTATGCTTGCT
ACTTGGATTCTGCACGAATTAAAAATAGTTTAAAAACCGTTAAAAACCCATTGGTGCCTG
TACTTTATTACAGACAGCAGTTTTTGCTCAGATTTCCCCAAAAAAACAAAGTGCTTCATA
TTCGTGCTTAGTCCTAACAATTATAACGACAATTGAGTTTTGATTCCCGATTTAAAAGTT
TCATATTAATCAGTGTTTCACAATCGAAAATGAATACGTAGCCACCGCATTTACAAAGTT
CTAATATTCCCACATTGGACATCACTGCAAAAGTTTATGATAAAAATGAGAACAAAAATA
CTAACAAAAATACTGTTTAACTAAATATTTTAACTTAACATTCCTATAGCCATATATTTA
ATAAAATAGTCGTAAATTAAACTAAACATGAGTTTGTGTCATTTTTCCAAAAGTTTTTTT
TTTGGACAAAAATTCTGCCAATTCCTTTATCTAGTCTGTCATTTTCAATCTAAACCATAA
TCTAAATACATTTCATGTGATCAAATTTACATTATAGGTGACTACTAATGTCATTTTCAT
TCATTCACTTAAATTTTGCAGTCACTATATTTTGTACTTGCATGGTGTACTGCTAAGTTG
CCATAAGAATAAATACTATTTACTGCAA

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[13-186] 6.3E-62
TIGRFAM
Small_GTP-bd_dom (IPR005225) - T[18-173] 2.2E-33
Pfam
Small_GTPase (IPR001806) - T[19-178] 1.9E-61

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RAB1A_HUMAN 55.024 % 229 5.4E-77
RAB35_HUMAN 75.862 % 300 6.91E-105
RAB1B_HUMAN 56.863 % 234 6.25E-79