- Transcript 'KH2012:KH.C10.80.v2....'
Transcript Model
Transcript Id
KH2012:KH.C10.80.v2.B.SL2-1
Possible name(s)
NR1I2; NR1I3; VDR
Gene model
Location
KhC10 [2,044,290 / 2,052,749]
Amino acid sequence
Length: 349
>KH.C10.80.v2.B.SL2-1
TDRANALSSPAASKKICVVCNDKATGMHFGAITCEGCKGFFRRSVKKNASFSCAFEKKCE
INKNNRKHCQACRFNACLAAGMNSSLILSDEEVNKKRDLIRMNREKSGSKQPQATRMTMD
EKLLVKTLLKGHRDSYDFAYVEYDTFRGREXXXPGSNDGQQEIGNNTENPNGLDAATAVE
AQSTTEDSAKQLFQHFCDIMTWGIRKVIDYCKGIPQFVQLSIVDQIVLLRGGCLEMLVLR
SYFAFSCNENKYMSDKFQYKPSDFLQAGGNKEFVEKYNSLHIRMRKMKLQVEEICLLLAL
VLFSPDRPGLEDQAKVEQMQDCVANTLQAYEYTHKPPNEVKQCYFMYLK
Nucleotide sequence
Length: 1,664
>KH2012:KH.C10.80.v2.B.SL2-1
TGTTACCCAGATCATGTTTCGCGCACGTTCCATTTGTTTTTATTTTAGTTTTAGATGTTC
ATTTTATTGTTAGAACTTAGATCAAATGCTAAACAACAAAAATGTCAAATCCTCAAGGCC
CATCGGCAGAAGTACTTAAGGTCAAGGATAAAGTAAAAGGCGCAACCGATACTAATACAG
GTAACATTATTTAATCCTGAACTGATAGAGCAAATGCATTATCTAGCCCTGCTGCATCAA
AGAAGATATGTGTTGTGTGCAATGACAAAGCAACTGGAATGCACTTTGGTGCAATCACAT
GTGAAGGGTGCAAGGGATTTTTTCGTCGCTCAGTGAAGAAAAATGCCTCATTCAGCTGTG
CATTTGAGAAAAAATGCGAGATCAACAAAAATAATAGAAAACATTGCCAAGCATGTAGAT
TCAATGCTTGTCTTGCAGCAGGAATGAATTCTTCGTTGATTCTAAGTGATGAAGAGGTTA
ACAAGAAAAGAGATTTGATTCGTATGAATCGAGAAAAAAGTGGTTCCAAACAGCCACAAG
CGACAAGAATGACAATGGATGAAAAACTATTGGTGAAAACACTGCTGAAGGGACATCGTG
ACAGTTATGACTTTGCGTACGTGGAATACGACACTTTTAGAGGAAGAGAGNNNNNNNNGC
CTGGTTCTAACGATGGCCAGCAGGAGATAGGAAATAACACGGAAAACCCGAATGGATTGG
ATGCAGCAACTGCAGTTGAAGCACAAAGTACAACTGAAGACTCAGCTAAACAACTTTTCC
AACATTTCTGTGACATTATGACATGGGGAATTCGGAAGGTTATAGATTATTGCAAGGGTA
TACCACAGTTTGTCCAACTATCCATCGTAGATCAGATTGTTCTGCTGAGAGGGGGTTGTT
TGGAGATGCTTGTACTGAGGTCGTACTTTGCGTTTTCATGCAACGAGAACAAGTACATGT
CCGACAAGTTTCAATACAAGCCAAGTGATTTTTTACAAGCTGGAGGCAACAAAGAGTTTG
TTGAGAAATATAACAGTCTTCATATTCGAATGCGCAAAATGAAACTGCAGGTTGAAGAGA
TTTGCCTTCTTCTCGCATTGGTTCTCTTCTCTCCTGACAGACCAGGATTAGAGGACCAGG
CAAAGGTGGAACAAATGCAGGATTGTGTTGCAAATACATTACAAGCATATGAATACACTC
ACAAACCACCAAACGAAGTAAAACAATGTTACTTTATGTACTTAAAATAAGCACTTCTAA
CTAAACCGTTTTCCTCCATAGTTCTTTCTAGTGTAACCTCTTTTGTCTAAACTTAAAAGT
ACTTACATCGGTACAAATTTAATAAATACCTGCCAAATTCAAGCCTAAATCATAAGTTTC
TATTCTTCCAACATACCACACTGTACCGCATCATAAAGTAGAACAGAGAAAAAAAAACAC
AAATAATTATAAAGATTCTATTATTAAAGCATCAACCTTCCATAATCAAGTCTTCCTTTT
TACAGGCTCGTACGATGTATTGTGAGCTGCTCCTCATTCTTCCTATCCTCCGTACCATCA
ACATGCTATTCGCTCAAAACATCATGTCCCTCAAGCAAACCAATGAAAAAGATATGAATC
CTCTGATTTTGGAAGTCAACAACAGTGCAGATGATGAAGATTAA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[8-116] 6.4E-32 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[14-89] 19.07 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[14-85] 2.6E-34 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[16-83] 4.6E-29 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[17-33] 5.5E-17 - T[33-48] 5.5E-17 - T[66-74] 5.5E-17 - T[74-82] 5.5E-17 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[17-43] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[78-88] 4.4E-13 - T[199-220] 4.4E-13 - T[220-236] 4.4E-13 - T[287-302] 4.4E-13 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[80-96] 4.4E-16 - T[196-217] 4.4E-16 - T[222-241] 4.4E-16 - T[287-309] 4.4E-16 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[117-339] 3.41E-49 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[185-331] 1.5E-19 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[198-344] 4.0E-25 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VDR_HUMAN | 34.819 % | 234 | 9.25E-74 |
| NR1I3_HUMAN | 35.077 % | 187 | 1.43E-56 |
| NR1I2_HUMAN | 32.337 % | 197 | 2.61E-59 |