Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 396

>KH.C10.80.v1.R.SL1-1
TDRANALSSPAASKKICVVCNDKATGMHFGAITCEGCKGFFRRSVKKNASFSCAFEKKCE
INKNNRKHCQACRFNACLAAGMNSSLILSDEEVNKKRDLIRMNREKSGSKQPQATRMTMD
EKLLVKTLLKGHRDSYDFAYVEYDTFRGREXXXPGSNDGQQEIGNNTENPNGLDAATAVE
AQSTTEDSAKQLFQHFCDIMTWGIRKVIDYCKGIPQFVQLSIVDQIVLLRGGCLEMLVLR
SYFAFSCNENKYMSDKFQYKPSDFLQAGGNKEFVEKYNSLHIRMRKMKLQVEEICLLLAL
VLFSPDRPGLEDQAKVEQMQDCVANTLQAYEYTHKPPNESSFLQARTMYCELLLILPILR
TINMLFAQNIMSLKQTNEKDMNPLILEVNNSADDED

Nucleotide sequence

Length: 1,343

>KH2012:KH.C10.80.v1.R.SL1-1
TTTTAGATGTTCATTTTATTGTTAGAACTTAGATCAAATGCTAAACAACAAAAATGTCAA
ATCCTCAAGGCCCATCGGCAGAAGTACTTAAGGTCAAGGATAAAGTAAAAGGCGCAACCG
ATACTAATACAGGTAACATTATTTAATCCTGAACTGATAGAGCAAATGCATTATCTAGCC
CTGCTGCATCAAAGAAGATATGTGTTGTGTGCAATGACAAAGCAACTGGAATGCACTTTG
GTGCAATCACATGTGAAGGGTGCAAGGGATTTTTTCGTCGCTCAGTGAAGAAAAATGCCT
CATTCAGCTGTGCATTTGAGAAAAAATGCGAGATCAACAAAAATAATAGAAAACATTGCC
AAGCATGTAGATTCAATGCTTGTCTTGCAGCAGGAATGAATTCTTCGTTGATTCTAAGTG
ATGAAGAGGTTAACAAGAAAAGAGATTTGATTCGTATGAATCGAGAAAAAAGTGGTTCCA
AACAGCCACAAGCGACAAGAATGACAATGGATGAAAAACTATTGGTGAAAACACTGCTGA
AGGGACATCGTGACAGTTATGACTTTGCGTACGTGGAATACGACACTTTTAGAGGAAGAG
AGNNNNNNNNGCCTGGTTCTAACGATGGCCAGCAGGAGATAGGAAATAACACGGAAAACC
CGAATGGATTGGATGCAGCAACTGCAGTTGAAGCACAAAGTACAACTGAAGACTCAGCTA
AACAACTTTTCCAACATTTCTGTGACATTATGACATGGGGAATTCGGAAGGTTATAGATT
ATTGCAAGGGTATACCACAGTTTGTCCAACTATCCATCGTAGATCAGATTGTTCTGCTGA
GAGGGGGTTGTTTGGAGATGCTTGTACTGAGGTCGTACTTTGCGTTTTCATGCAACGAGA
ACAAGTACATGTCCGACAAGTTTCAATACAAGCCAAGTGATTTTTTACAAGCTGGAGGCA
ACAAAGAGTTTGTTGAGAAATATAACAGTCTTCATATTCGAATGCGCAAAATGAAACTGC
AGGTTGAAGAGATTTGCCTTCTTCTCGCATTGGTTCTCTTCTCTCCTGACAGACCAGGAT
TAGAGGACCAGGCAAAGGTGGAACAAATGCAGGATTGTGTTGCAAATACATTACAAGCAT
ATGAATACACTCACAAACCACCAAACGAATCTTCCTTTTTACAGGCTCGTACGATGTATT
GTGAGCTGCTCCTCATTCTTCCTATCCTCCGTACCATCAACATGCTATTCGCTCAAAACA
TCATGTCCCTCAAGCAAACCAATGAAAAAGATATGAATCCTCTGATTTTGGAAGTCAACA
ACAGTGCAGATGATGAAGATTAA

InterProScan

Gene3D	Znf_NHR/GATA (IPR013088) - T[8-117] 8.1E-32
SMART	Znf_hrmn_rcpt (IPR001628) - T[14-85] 2.6E-34
ProSiteProfiles	Znf_hrmn_rcpt (IPR001628) - T[14-89] 19.07
Pfam	Znf_hrmn_rcpt (IPR001628) - T[16-83] 5.6E-29
ProSitePatterns	Znf_hrmn_rcpt (IPR001628) - T[17-43] .
PRINTS	Znf_hrmn_rcpt (IPR001628) - T[17-33] 8.4E-17 - T[33-48] 8.4E-17 - T[66-74] 8.4E-17 - T[74-82] 8.4E-17
PRINTS	Nuclear_hrmn_rcpt (IPR001723) - T[78-88] 4.8E-18 - T[199-220] 4.8E-18 - T[220-236] 4.8E-18 - T[287-302] 4.8E-18 - T[351-368] 4.8E-18
PRINTS	ThyrH_rcpt (IPR001728) - T[80-96] 6.7E-16 - T[196-217] 6.7E-16 - T[222-241] 6.7E-16 - T[287-309] 6.7E-16
SUPERFAMILY	NHR_like_dom_sf (IPR035500) - T[117-388] 5.64E-58
Pfam	Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[185-370] 2.3E-22
SMART	Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[198-363] 2.6E-35