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  1. Transcript 'KH2012:KH.C10.59.v4....'

Transcript Model

Transcript Id

KH2012:KH.C10.59.v4.A.nonSL4-1

Possible name(s)

CADM4; NECTIN1; NECTIN3

Location

KhC10 [2,527,624 / 2,544,736]

Sequences

Amino acid sequence

Length: 607

>KH.C10.59.v4.A.nonSL4-1
IPRILKAALLLGCFCCYGVHGTNVIQGESAFIPCYNPETASQFPNMLVILEFQPTPTAPQ
QLVSHYQPAQLKDPVVFATGSRYRGRLQFMNTGQLEIKFISLPDEGTFTCTAQVYSLAPS
KIITSVIVYVAPQFEVRKVNDPLLISDGGTMVNAAECIASNGKPPAVVFWGTNRHLDFDQ
TATNSSTTPLLTTAVSTLHVEPTKFYNKQSFYCEMRHPSIPNSKRETIYLNVTYPPETPT
ITVTADGLSLTCISHANPPATISWLLPASAPSRTFMGPTVSMMSPNTAERSNDTYTCTAN
NGIGVAVQSTITAGEASAVIVVTKESNVGIMVGAIIGSLVVLAIIIALIYFFIIKPAREK
DTGPYDQTIQPFKADSRQSSGRFESTSRSRPLIEHANESLNQNRPPSPNQPPPEDVPDSG
SSDSDSSEGNHDVDFDVDPSTNLVDRPGEPAGITSRASVNFQPYWRNSISEARRKRPSTS
PASRRSRIEPKQEESPSPAPRQQQPRYDYPPEGSSYDENDQESPTLQYNRHGYPDEEFSD
PYHQPAFVQYPPEPHQPPRRTDSLPQYEPKYTEIDHGNYKKGTGQRRPQYEEPVEYAQIR
HGYSHVV

Nucleotide sequence

Length: 2,491

>KH2012:KH.C10.59.v4.A.nonSL4-1
TTATTCCAAGAATACTCAAAGCAGCGCTTCTGTTGGGTTGTTTTTGTTGCTATGGAGTGC
ATGGAACTAATGTAATACAGGGTGAGTCGGCTTTCATCCCATGTTACAACCCTGAAACTG
CCTCACAGTTTCCGAACATGTTGGTTATATTAGAATTTCAACCAACACCAACTGCTCCTC
AGCAGCTAGTTAGCCATTACCAGCCTGCTCAGCTCAAAGACCCAGTTGTGTTTGCGACTG
GTAGTCGATATAGAGGACGCCTACAATTCATGAACACTGGTCAGCTTGAGATTAAATTCA
TCAGCTTACCTGACGAGGGAACTTTCACATGCACAGCACAAGTATACTCACTTGCACCAA
GCAAGATTATAACATCTGTCATTGTTTATGTTGCCCCTCAGTTTGAGGTTAGAAAAGTAA
ATGATCCTCTACTAATTAGTGATGGTGGCACGATGGTCAATGCTGCAGAATGCATTGCTA
GTAATGGTAAGCCACCAGCTGTGGTTTTCTGGGGCACAAACCGTCACCTAGATTTCGACC
AAACTGCTACAAACAGCAGCACAACACCCCTTCTCACAACTGCAGTGTCTACACTTCATG
TTGAACCAACCAAATTCTACAACAAACAATCCTTCTACTGTGAGATGAGACATCCCTCCA
TTCCCAACAGCAAGCGAGAAACCATATACCTTAATGTTACTTACCCTCCAGAAACCCCCA
CCATCACAGTAACTGCTGATGGCTTGAGTCTTACATGTATTTCCCATGCTAACCCTCCGG
CAACTATATCATGGTTGTTGCCAGCGTCGGCACCTTCGCGCACTTTTATGGGTCCAACTG
TGTCCATGATGTCACCGAACACGGCCGAGCGCTCCAACGACACATACACTTGCACAGCAA
ATAATGGAATAGGAGTAGCAGTACAGAGCACCATTACTGCTGGGGAGGCATCAGCTGTCA
TTGTTGTGACAAAAGAAAGCAATGTTGGAATAATGGTTGGAGCAATCATTGGAAGTTTGG
TTGTCCTTGCGATCATTATTGCTCTCATCTACTTCTTCATCATAAAACCTGCCAGAGAAA
AAGATACAGGGCCCTATGACCAAACTATACAACCTTTTAAAGCAGACAGCCGACAATCGA
GTGGTCGATTTGAATCCACTTCAAGGTCGCGACCTTTAATCGAACACGCGAACGAGAGCT
TAAACCAAAACCGACCCCCTAGTCCCAACCAACCTCCACCTGAAGATGTTCCCGATAGTG
GCAGCAGTGACTCTGATTCAAGCGAGGGCAACCATGATGTAGATTTTGATGTTGATCCTT
CAACAAACTTGGTGGATCGACCAGGAGAACCAGCCGGCATCACCAGCAGGGCATCTGTCA
ATTTCCAGCCTTACTGGAGAAATTCTATCTCTGAGGCGCGCCGCAAGCGACCCAGCACCT
CCCCAGCCTCCCGTCGAAGCCGTATTGAACCCAAACAAGAAGAATCTCCGTCCCCCGCCC
CACGTCAGCAACAGCCGAGGTACGACTACCCACCGGAGGGCAGCAGCTACGACGAAAATG
ACCAGGAATCCCCAACCCTCCAATACAACAGACACGGATATCCAGATGAAGAATTTTCCG
ATCCTTACCATCAACCTGCATTTGTTCAATACCCACCTGAACCCCACCAACCACCCCGTA
GAACAGACAGCTTACCACAATATGAACCCAAATATACTGAAATTGATCATGGCAACTATA
AAAAGGGCACAGGCCAACGAAGACCACAATATGAAGAGCCAGTGGAGTACGCACAGATCA
GACATGGGTATTCACACGTTGTATAAACTTAAGCATTTGCTATATAAAAATAGTGCTACA
CGCTAACTGAAACTTTGTGCAGAACTTTTAGTAAACCACATATAAATGCACTTGGTCTAA
AGATTTTCTGTTTAGTTTAAAAAAAGAAACAGAAAACACATACGGAAAACATCATTTTTC
ATTACAACAGCAAGTCTCAACAGCTATATCAGATTAGCTTTGAAACTTTTTCTAACTTTG
TTTTATAAAAACTGTACCAAACAAATTGTATTCATATATTTTCTTCCAACTGTACGTTGC
TTTTATGTTTTTCAAACTACATATCAAAGTGACAGGTGCTACCCTAATGACATTATTATA
GTTTCTGATGGTACTATCATGGTTTCTGTTAACTTCATTATGTTTTTTTACAATGTGATT
AAAGTTTTTATGATATCATGATTTTTTACCGTAGTAACTGGTTTAATACTTTCATACAAT
GCTGCAGACCTAGAAGCAGCTGAGCTTAATTTTTAGCAGTTCAGATACCTTTACCAAAGC
CACCAGCTTTGCATTTCTGCCTTGCTCAAATGTTGTAGGTTCTAGGTTTCTCTCAAAACG
TTTTAATAATCTAGTCGCACATTTGGAACTACGATTTTTGTGTAAATAACAATTTGTGTT
GATCAAGTTTGCTTTGTATATGTTTTTATCT

InterProScan

Gene3D
Ig-like_fold (IPR013783) - T[21-129] 3.3E-7 - T[142-239] 8.9E-16 - T[240-323] 1.0E-7
SUPERFAMILY
Ig-like_dom_sf (IPR036179) - T[21-115] 1.76E-5 - T[156-236] 6.5E-7 - T[238-310] 1.9E-7
ProSiteProfiles
Ig-like_dom (IPR007110) - T[132-233] 9.246 - T[236-312] 9.047
Pfam
CD80_C2-set (IPR013162) - T[151-219] 3.1E-9

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value