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  1. Transcript 'KH2012:KH.C10.59.v4....'

Transcript Model

Transcript Id

KH2012:KH.C10.59.v4.A.nonSL3-1

Possible name(s)

CADM4; NECTIN1; NECTIN3

Location

KhC10 [2,527,624 / 2,544,734]

Sequences

Amino acid sequence

Length: 607

>KH.C10.59.v4.A.nonSL3-1
IPRILKAALLLGCFCCYGVHGTNVIQGESAFIPCYNPETASQFPNMLVILEFQPTPTAPQ
QLVSHYQPAQLKDPVVFATGSRYRGRLQFMNTGQLEIKFISLPDEGTFTCTAQVYSLAPS
KIITSVIVYVAPQFEVRKVNDPLLISDGGTMVNAAECIASNGKPPAVVFWGTNRHLDFDQ
TATNSSTTPLLTTAVSTLHVEPTKFYNKQSFYCEMRHPSIPNSKRETIYLNVTYPPETPT
ITVTADGLSLTCISHANPPATISWLLPASAPSRTFMGPTVSMMSPNTAERSNDTYTCTAN
NGIGVAVQSTITAGEASAVIVVTKESNVGIMVGAIIGSLVVLAIIIALIYFFIIKPAREK
DTGPYDQTIQPFKADSRQSSGRFESTSRSRPLIEHANESLNQNRPPSPNQPPPEDVPDSG
SSDSDSSEGNHDVDFDVDPSTNLVDRPGEPAGITSRASVNFQPYWRNSISEARRKRPSTS
PASRRSRIEPKQEESPSPAPRQQQPRYDYPPEGSSYDENDQESPTLQYNRHGYPDEEFSD
PYHQPAFVQYPPEPHQPPRRTDSLPQYEPKYTEIDHGNYKKGTGQRRPQYEEPVEYAQIR
HGYSHVV

Nucleotide sequence

Length: 2,489

>KH2012:KH.C10.59.v4.A.nonSL3-1
ATTCCAAGAATACTCAAAGCAGCGCTTCTGTTGGGTTGTTTTTGTTGCTATGGAGTGCAT
GGAACTAATGTAATACAGGGTGAGTCGGCTTTCATCCCATGTTACAACCCTGAAACTGCC
TCACAGTTTCCGAACATGTTGGTTATATTAGAATTTCAACCAACACCAACTGCTCCTCAG
CAGCTAGTTAGCCATTACCAGCCTGCTCAGCTCAAAGACCCAGTTGTGTTTGCGACTGGT
AGTCGATATAGAGGACGCCTACAATTCATGAACACTGGTCAGCTTGAGATTAAATTCATC
AGCTTACCTGACGAGGGAACTTTCACATGCACAGCACAAGTATACTCACTTGCACCAAGC
AAGATTATAACATCTGTCATTGTTTATGTTGCCCCTCAGTTTGAGGTTAGAAAAGTAAAT
GATCCTCTACTAATTAGTGATGGTGGCACGATGGTCAATGCTGCAGAATGCATTGCTAGT
AATGGTAAGCCACCAGCTGTGGTTTTCTGGGGCACAAACCGTCACCTAGATTTCGACCAA
ACTGCTACAAACAGCAGCACAACACCCCTTCTCACAACTGCAGTGTCTACACTTCATGTT
GAACCAACCAAATTCTACAACAAACAATCCTTCTACTGTGAGATGAGACATCCCTCCATT
CCCAACAGCAAGCGAGAAACCATATACCTTAATGTTACTTACCCTCCAGAAACCCCCACC
ATCACAGTAACTGCTGATGGCTTGAGTCTTACATGTATTTCCCATGCTAACCCTCCGGCA
ACTATATCATGGTTGTTGCCAGCGTCGGCACCTTCGCGCACTTTTATGGGTCCAACTGTG
TCCATGATGTCACCGAACACGGCCGAGCGCTCCAACGACACATACACTTGCACAGCAAAT
AATGGAATAGGAGTAGCAGTACAGAGCACCATTACTGCTGGGGAGGCATCAGCTGTCATT
GTTGTGACAAAAGAAAGCAATGTTGGAATAATGGTTGGAGCAATCATTGGAAGTTTGGTT
GTCCTTGCGATCATTATTGCTCTCATCTACTTCTTCATCATAAAACCTGCCAGAGAAAAA
GATACAGGGCCCTATGACCAAACTATACAACCTTTTAAAGCAGACAGCCGACAATCGAGT
GGTCGATTTGAATCCACTTCAAGGTCGCGACCTTTAATCGAACACGCGAACGAGAGCTTA
AACCAAAACCGACCCCCTAGTCCCAACCAACCTCCACCTGAAGATGTTCCCGATAGTGGC
AGCAGTGACTCTGATTCAAGCGAGGGCAACCATGATGTAGATTTTGATGTTGATCCTTCA
ACAAACTTGGTGGATCGACCAGGAGAACCAGCCGGCATCACCAGCAGGGCATCTGTCAAT
TTCCAGCCTTACTGGAGAAATTCTATCTCTGAGGCGCGCCGCAAGCGACCCAGCACCTCC
CCAGCCTCCCGTCGAAGCCGTATTGAACCCAAACAAGAAGAATCTCCGTCCCCCGCCCCA
CGTCAGCAACAGCCGAGGTACGACTACCCACCGGAGGGCAGCAGCTACGACGAAAATGAC
CAGGAATCCCCAACCCTCCAATACAACAGACACGGATATCCAGATGAAGAATTTTCCGAT
CCTTACCATCAACCTGCATTTGTTCAATACCCACCTGAACCCCACCAACCACCCCGTAGA
ACAGACAGCTTACCACAATATGAACCCAAATATACTGAAATTGATCATGGCAACTATAAA
AAGGGCACAGGCCAACGAAGACCACAATATGAAGAGCCAGTGGAGTACGCACAGATCAGA
CATGGGTATTCACACGTTGTATAAACTTAAGCATTTGCTATATAAAAATAGTGCTACACG
CTAACTGAAACTTTGTGCAGAACTTTTAGTAAACCACATATAAATGCACTTGGTCTAAAG
ATTTTCTGTTTAGTTTAAAAAAAGAAACAGAAAACACATACGGAAAACATCATTTTTCAT
TACAACAGCAAGTCTCAACAGCTATATCAGATTAGCTTTGAAACTTTTTCTAACTTTGTT
TTATAAAAACTGTACCAAACAAATTGTATTCATATATTTTCTTCCAACTGTACGTTGCTT
TTATGTTTTTCAAACTACATATCAAAGTGACAGGTGCTACCCTAATGACATTATTATAGT
TTCTGATGGTACTATCATGGTTTCTGTTAACTTCATTATGTTTTTTTACAATGTGATTAA
AGTTTTTATGATATCATGATTTTTTACCGTAGTAACTGGTTTAATACTTTCATACAATGC
TGCAGACCTAGAAGCAGCTGAGCTTAATTTTTAGCAGTTCAGATACCTTTACCAAAGCCA
CCAGCTTTGCATTTCTGCCTTGCTCAAATGTTGTAGGTTCTAGGTTTCTCTCAAAACGTT
TTAATAATCTAGTCGCACATTTGGAACTACGATTTTTGTGTAAATAACAATTTGTGTTGA
TCAAGTTTGCTTTGTATATGTTTTTATCT

InterProScan

Gene3D
Ig-like_fold (IPR013783) - T[21-129] 3.3E-7 - T[142-239] 8.9E-16 - T[240-323] 1.0E-7
SUPERFAMILY
Ig-like_dom_sf (IPR036179) - T[21-115] 1.76E-5 - T[156-236] 6.5E-7 - T[238-310] 1.9E-7
ProSiteProfiles
Ig-like_dom (IPR007110) - T[132-233] 9.246 - T[236-312] 9.047
Pfam
CD80_C2-set (IPR013162) - T[151-219] 3.1E-9

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value