- Molecular Tool 'Hox12-MO (Ikuta 2010)' >
- Transcript 'KH2012:KH.C1.1098.v1...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C10.59.v1....'
Transcript Model
Transcript Id
KH2012:KH.C10.59.v1.A.SL1-1
Possible name(s)
CADM4; NECTIN1; NECTIN3
Gene model
Location
KhC10 [2,527,624 / 2,544,830]
Amino acid sequence
Length: 607
>KH.C10.59.v1.A.SL1-1
ITMILRRIFIPRILKAALLLGCFCCYGVHGTNVIQGESAFIPCYNPETASQFPNMLVILE
FQPTPTAPQQLVSHYQPAQLKDPVVFATGSRYRGRLQFMNTGQLEIKFISLPDEGTFTCT
AQVYSLAPSKIITSVIVYVAPQFEVRKVNDPLLISDGGTMVNAAECIASNGKPPAVVFWG
TNRHLDFDQTATNSSTTPLLTTAVSTLHVEPTKFYNKQSFYCEMRHPSIPNSKRETIYLN
VTYPPETPTITVTADGLSLTCISHANPPATISWLLPASAPSRTFMGPTVSMMSPNTAERS
NDTYTCTANNGIGVAVQSTITAGEASAVIVVTKESNVGIMVGAIIGSLVVLAIIIALIYF
FIIKPAREKDTGPYDQTIQPFKADSRQSSGRFESTSRSRPLIEHANESLNQNRPPSPNQP
PPEDVPDSGSSDSDSSEGNHDVDFDVDPSTNLVDRPGEPAGITSRASVNFQARRKRPSTS
PASRRSRIEPKQEESPSPAPRQQQPRYDYPPEGSSYDENDQESPTLQYNRHGYPDEEFSD
PYHQPAFVQYPPEPHQPPRRTDSLPQYEPKYTEIDHGNYKKGTGQRRPQYEEPVEYAQIR
HGYSHVV
Nucleotide sequence
Length: 2,558
>KH2012:KH.C10.59.v1.A.SL1-1
AAAGAAAAAAACGAATTATTCAAAATATTGTTTGTATTTGTTGGTTTAGTGTCAATATAG
AAAAAGTAAATAACCATGATTTTAAGGCGGATATTTATTCCAAGAATACTCAAAGCAGCG
CTTCTGTTGGGTTGTTTTTGTTGCTATGGAGTGCATGGAACTAATGTAATACAGGGTGAG
TCGGCTTTCATCCCATGTTACAACCCTGAAACTGCCTCACAGTTTCCGAACATGTTGGTT
ATATTAGAATTTCAACCAACACCAACTGCTCCTCAGCAGCTAGTTAGCCATTACCAGCCT
GCTCAGCTCAAAGACCCAGTTGTGTTTGCGACTGGTAGTCGATATAGAGGACGCCTACAA
TTCATGAACACTGGTCAGCTTGAGATTAAATTCATCAGCTTACCTGACGAGGGAACTTTC
ACATGCACAGCACAAGTATACTCACTTGCACCAAGCAAGATTATAACATCTGTCATTGTT
TATGTTGCCCCTCAGTTTGAGGTTAGAAAAGTAAATGATCCTCTACTAATTAGTGATGGT
GGCACGATGGTCAATGCTGCAGAATGCATTGCTAGTAATGGTAAGCCACCAGCTGTGGTT
TTCTGGGGCACAAACCGTCACCTAGATTTCGACCAAACTGCTACAAACAGCAGCACAACA
CCCCTTCTCACAACTGCAGTGTCTACACTTCATGTTGAACCAACCAAATTCTACAACAAA
CAATCCTTCTACTGTGAGATGAGACATCCCTCCATTCCCAACAGCAAGCGAGAAACCATA
TACCTTAATGTTACTTACCCTCCAGAAACCCCCACCATCACAGTAACTGCTGATGGCTTG
AGTCTTACATGTATTTCCCATGCTAACCCTCCGGCAACTATATCATGGTTGTTGCCAGCG
TCGGCACCTTCGCGCACTTTTATGGGTCCAACTGTGTCCATGATGTCACCGAACACGGCC
GAGCGCTCCAACGACACATACACTTGCACAGCAAATAATGGAATAGGAGTAGCAGTACAG
AGCACCATTACTGCTGGGGAGGCATCAGCTGTCATTGTTGTGACAAAAGAAAGCAATGTT
GGAATAATGGTTGGAGCAATCATTGGAAGTTTGGTTGTCCTTGCGATCATTATTGCTCTC
ATCTACTTCTTCATCATAAAACCTGCCAGAGAAAAAGATACAGGGCCCTATGACCAAACT
ATACAACCTTTTAAAGCAGACAGCCGACAATCGAGTGGTCGATTTGAATCCACTTCAAGG
TCGCGACCTTTAATCGAACACGCGAACGAGAGCTTAAACCAAAACCGACCCCCTAGTCCC
AACCAACCTCCACCTGAAGATGTTCCCGATAGTGGCAGCAGTGACTCTGATTCAAGCGAG
GGCAACCATGATGTAGATTTTGATGTTGATCCTTCAACAAACTTGGTGGATCGACCAGGA
GAACCAGCCGGCATCACCAGCAGGGCATCTGTCAATTTCCAGGCGCGCCGCAAGCGACCC
AGCACCTCCCCAGCCTCCCGTCGAAGCCGTATTGAACCCAAACAAGAAGAATCTCCGTCC
CCCGCCCCACGTCAGCAACAGCCGAGGTACGACTACCCACCGGAGGGCAGCAGCTACGAC
GAAAATGACCAGGAATCCCCAACCCTCCAATACAACAGACACGGATATCCAGATGAAGAA
TTTTCCGATCCTTACCATCAACCTGCATTTGTTCAATACCCACCTGAACCCCACCAACCA
CCCCGTAGAACAGACAGCTTACCACAATATGAACCCAAATATACTGAAATTGATCATGGC
AACTATAAAAAGGGCACAGGCCAACGAAGACCACAATATGAAGAGCCAGTGGAGTACGCA
CAGATCAGACATGGGTATTCACACGTTGTATAAACTTAAGCATTTGCTATATAAAAATAG
TGCTACACGCTAACTGAAACTTTGTGCAGAACTTTTAGTAAACCACATATAAATGCACTT
GGTCTAAAGATTTTCTGTTTAGTTTAAAAAAAGAAACAGAAAACACATACGGAAAACATC
ATTTTTCATTACAACAGCAAGTCTCAACAGCTATATCAGATTAGCTTTGAAACTTTTTCT
AACTTTGTTTTATAAAAACTGTACCAAACAAATTGTATTCATATATTTTCTTCCAACTGT
ACGTTGCTTTTATGTTTTTCAAACTACATATCAAAGTGACAGGTGCTACCCTAATGACAT
TATTATAGTTTCTGATGGTACTATCATGGTTTCTGTTAACTTCATTATGTTTTTTTACAA
TGTGATTAAAGTTTTTATGATATCATGATTTTTTACCGTAGTAACTGGTTTAATACTTTC
ATACAATGCTGCAGACCTAGAAGCAGCTGAGCTTAATTTTTAGCAGTTCAGATACCTTTA
CCAAAGCCACCAGCTTTGCATTTCTGCCTTGCTCAAATGTTGTAGGTTCTAGGTTTCTCT
CAAAACGTTTTAATAATCTAGTCGCACATTTGGAACTACGATTTTTGTGTAAATAACAAT
TTGTGTTGATCAAGTTTGCTTTGTATATGTTTTTATCT
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[30-124] 1.76E-5 - T[165-245] 6.5E-7 - T[247-319] 1.9E-7 |
| Gene3D |
Ig-like_fold (IPR013783) - T[30-138] 3.3E-7 - T[151-248] 8.9E-16 - T[249-332] 1.0E-7 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[141-242] 9.246 - T[245-321] 9.047 |
| Pfam |
CD80_C2-set (IPR013162) - T[160-228] 3.1E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|