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  1. Transcript 'KH2012:KH.C10.59.v1....'

Transcript Model

Transcript Id

KH2012:KH.C10.59.v1.A.nonSL4-1

Possible name(s)

CADM4; NECTIN1; NECTIN3

Location

KhC10 [2,527,624 / 2,544,736]

Sequences

Amino acid sequence

Length: 598

>KH.C10.59.v1.A.nonSL4-1
IPRILKAALLLGCFCCYGVHGTNVIQGESAFIPCYNPETASQFPNMLVILEFQPTPTAPQ
QLVSHYQPAQLKDPVVFATGSRYRGRLQFMNTGQLEIKFISLPDEGTFTCTAQVYSLAPS
KIITSVIVYVAPQFEVRKVNDPLLISDGGTMVNAAECIASNGKPPAVVFWGTNRHLDFDQ
TATNSSTTPLLTTAVSTLHVEPTKFYNKQSFYCEMRHPSIPNSKRETIYLNVTYPPETPT
ITVTADGLSLTCISHANPPATISWLLPASAPSRTFMGPTVSMMSPNTAERSNDTYTCTAN
NGIGVAVQSTITAGEASAVIVVTKESNVGIMVGAIIGSLVVLAIIIALIYFFIIKPAREK
DTGPYDQTIQPFKADSRQSSGRFESTSRSRPLIEHANESLNQNRPPSPNQPPPEDVPDSG
SSDSDSSEGNHDVDFDVDPSTNLVDRPGEPAGITSRASVNFQARRKRPSTSPASRRSRIE
PKQEESPSPAPRQQQPRYDYPPEGSSYDENDQESPTLQYNRHGYPDEEFSDPYHQPAFVQ
YPPEPHQPPRRTDSLPQYEPKYTEIDHGNYKKGTGQRRPQYEEPVEYAQIRHGYSHVV

Nucleotide sequence

Length: 2,464

>KH2012:KH.C10.59.v1.A.nonSL4-1
TTATTCCAAGAATACTCAAAGCAGCGCTTCTGTTGGGTTGTTTTTGTTGCTATGGAGTGC
ATGGAACTAATGTAATACAGGGTGAGTCGGCTTTCATCCCATGTTACAACCCTGAAACTG
CCTCACAGTTTCCGAACATGTTGGTTATATTAGAATTTCAACCAACACCAACTGCTCCTC
AGCAGCTAGTTAGCCATTACCAGCCTGCTCAGCTCAAAGACCCAGTTGTGTTTGCGACTG
GTAGTCGATATAGAGGACGCCTACAATTCATGAACACTGGTCAGCTTGAGATTAAATTCA
TCAGCTTACCTGACGAGGGAACTTTCACATGCACAGCACAAGTATACTCACTTGCACCAA
GCAAGATTATAACATCTGTCATTGTTTATGTTGCCCCTCAGTTTGAGGTTAGAAAAGTAA
ATGATCCTCTACTAATTAGTGATGGTGGCACGATGGTCAATGCTGCAGAATGCATTGCTA
GTAATGGTAAGCCACCAGCTGTGGTTTTCTGGGGCACAAACCGTCACCTAGATTTCGACC
AAACTGCTACAAACAGCAGCACAACACCCCTTCTCACAACTGCAGTGTCTACACTTCATG
TTGAACCAACCAAATTCTACAACAAACAATCCTTCTACTGTGAGATGAGACATCCCTCCA
TTCCCAACAGCAAGCGAGAAACCATATACCTTAATGTTACTTACCCTCCAGAAACCCCCA
CCATCACAGTAACTGCTGATGGCTTGAGTCTTACATGTATTTCCCATGCTAACCCTCCGG
CAACTATATCATGGTTGTTGCCAGCGTCGGCACCTTCGCGCACTTTTATGGGTCCAACTG
TGTCCATGATGTCACCGAACACGGCCGAGCGCTCCAACGACACATACACTTGCACAGCAA
ATAATGGAATAGGAGTAGCAGTACAGAGCACCATTACTGCTGGGGAGGCATCAGCTGTCA
TTGTTGTGACAAAAGAAAGCAATGTTGGAATAATGGTTGGAGCAATCATTGGAAGTTTGG
TTGTCCTTGCGATCATTATTGCTCTCATCTACTTCTTCATCATAAAACCTGCCAGAGAAA
AAGATACAGGGCCCTATGACCAAACTATACAACCTTTTAAAGCAGACAGCCGACAATCGA
GTGGTCGATTTGAATCCACTTCAAGGTCGCGACCTTTAATCGAACACGCGAACGAGAGCT
TAAACCAAAACCGACCCCCTAGTCCCAACCAACCTCCACCTGAAGATGTTCCCGATAGTG
GCAGCAGTGACTCTGATTCAAGCGAGGGCAACCATGATGTAGATTTTGATGTTGATCCTT
CAACAAACTTGGTGGATCGACCAGGAGAACCAGCCGGCATCACCAGCAGGGCATCTGTCA
ATTTCCAGGCGCGCCGCAAGCGACCCAGCACCTCCCCAGCCTCCCGTCGAAGCCGTATTG
AACCCAAACAAGAAGAATCTCCGTCCCCCGCCCCACGTCAGCAACAGCCGAGGTACGACT
ACCCACCGGAGGGCAGCAGCTACGACGAAAATGACCAGGAATCCCCAACCCTCCAATACA
ACAGACACGGATATCCAGATGAAGAATTTTCCGATCCTTACCATCAACCTGCATTTGTTC
AATACCCACCTGAACCCCACCAACCACCCCGTAGAACAGACAGCTTACCACAATATGAAC
CCAAATATACTGAAATTGATCATGGCAACTATAAAAAGGGCACAGGCCAACGAAGACCAC
AATATGAAGAGCCAGTGGAGTACGCACAGATCAGACATGGGTATTCACACGTTGTATAAA
CTTAAGCATTTGCTATATAAAAATAGTGCTACACGCTAACTGAAACTTTGTGCAGAACTT
TTAGTAAACCACATATAAATGCACTTGGTCTAAAGATTTTCTGTTTAGTTTAAAAAAAGA
AACAGAAAACACATACGGAAAACATCATTTTTCATTACAACAGCAAGTCTCAACAGCTAT
ATCAGATTAGCTTTGAAACTTTTTCTAACTTTGTTTTATAAAAACTGTACCAAACAAATT
GTATTCATATATTTTCTTCCAACTGTACGTTGCTTTTATGTTTTTCAAACTACATATCAA
AGTGACAGGTGCTACCCTAATGACATTATTATAGTTTCTGATGGTACTATCATGGTTTCT
GTTAACTTCATTATGTTTTTTTACAATGTGATTAAAGTTTTTATGATATCATGATTTTTT
ACCGTAGTAACTGGTTTAATACTTTCATACAATGCTGCAGACCTAGAAGCAGCTGAGCTT
AATTTTTAGCAGTTCAGATACCTTTACCAAAGCCACCAGCTTTGCATTTCTGCCTTGCTC
AAATGTTGTAGGTTCTAGGTTTCTCTCAAAACGTTTTAATAATCTAGTCGCACATTTGGA
ACTACGATTTTTGTGTAAATAACAATTTGTGTTGATCAAGTTTGCTTTGTATATGTTTTT
ATCT

InterProScan

SUPERFAMILY
Ig-like_dom_sf (IPR036179) - T[21-115] 1.7E-5 - T[156-236] 6.46E-7 - T[238-310] 1.84E-7
Gene3D
Ig-like_fold (IPR013783) - T[21-129] 3.2E-7 - T[142-234] 9.0E-16 - T[235-313] 5.8E-8
ProSiteProfiles
Ig-like_dom (IPR007110) - T[132-233] 9.246 - T[236-312] 9.047
Pfam
CD80_C2-set (IPR013162) - T[151-219] 3.0E-9

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value