- Transcript 'Moocci.CG.ELv1_2.S61...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Region 'REG00000431' >
- Molecular Tool 'Coe>Dmbx (Stolfi 2011)' >
- Transcript 'KH2012:KH.C10.59.v1....'
Transcript Model
Transcript Id
KH2012:KH.C10.59.v1.A.nonSL3-1
Possible name(s)
CADM4; NECTIN1; NECTIN3
Gene model
Location
KhC10 [2,527,624 / 2,544,734]
Amino acid sequence
Length: 598
>KH.C10.59.v1.A.nonSL3-1
IPRILKAALLLGCFCCYGVHGTNVIQGESAFIPCYNPETASQFPNMLVILEFQPTPTAPQ
QLVSHYQPAQLKDPVVFATGSRYRGRLQFMNTGQLEIKFISLPDEGTFTCTAQVYSLAPS
KIITSVIVYVAPQFEVRKVNDPLLISDGGTMVNAAECIASNGKPPAVVFWGTNRHLDFDQ
TATNSSTTPLLTTAVSTLHVEPTKFYNKQSFYCEMRHPSIPNSKRETIYLNVTYPPETPT
ITVTADGLSLTCISHANPPATISWLLPASAPSRTFMGPTVSMMSPNTAERSNDTYTCTAN
NGIGVAVQSTITAGEASAVIVVTKESNVGIMVGAIIGSLVVLAIIIALIYFFIIKPAREK
DTGPYDQTIQPFKADSRQSSGRFESTSRSRPLIEHANESLNQNRPPSPNQPPPEDVPDSG
SSDSDSSEGNHDVDFDVDPSTNLVDRPGEPAGITSRASVNFQARRKRPSTSPASRRSRIE
PKQEESPSPAPRQQQPRYDYPPEGSSYDENDQESPTLQYNRHGYPDEEFSDPYHQPAFVQ
YPPEPHQPPRRTDSLPQYEPKYTEIDHGNYKKGTGQRRPQYEEPVEYAQIRHGYSHVV
Nucleotide sequence
Length: 2,462
>KH2012:KH.C10.59.v1.A.nonSL3-1
ATTCCAAGAATACTCAAAGCAGCGCTTCTGTTGGGTTGTTTTTGTTGCTATGGAGTGCAT
GGAACTAATGTAATACAGGGTGAGTCGGCTTTCATCCCATGTTACAACCCTGAAACTGCC
TCACAGTTTCCGAACATGTTGGTTATATTAGAATTTCAACCAACACCAACTGCTCCTCAG
CAGCTAGTTAGCCATTACCAGCCTGCTCAGCTCAAAGACCCAGTTGTGTTTGCGACTGGT
AGTCGATATAGAGGACGCCTACAATTCATGAACACTGGTCAGCTTGAGATTAAATTCATC
AGCTTACCTGACGAGGGAACTTTCACATGCACAGCACAAGTATACTCACTTGCACCAAGC
AAGATTATAACATCTGTCATTGTTTATGTTGCCCCTCAGTTTGAGGTTAGAAAAGTAAAT
GATCCTCTACTAATTAGTGATGGTGGCACGATGGTCAATGCTGCAGAATGCATTGCTAGT
AATGGTAAGCCACCAGCTGTGGTTTTCTGGGGCACAAACCGTCACCTAGATTTCGACCAA
ACTGCTACAAACAGCAGCACAACACCCCTTCTCACAACTGCAGTGTCTACACTTCATGTT
GAACCAACCAAATTCTACAACAAACAATCCTTCTACTGTGAGATGAGACATCCCTCCATT
CCCAACAGCAAGCGAGAAACCATATACCTTAATGTTACTTACCCTCCAGAAACCCCCACC
ATCACAGTAACTGCTGATGGCTTGAGTCTTACATGTATTTCCCATGCTAACCCTCCGGCA
ACTATATCATGGTTGTTGCCAGCGTCGGCACCTTCGCGCACTTTTATGGGTCCAACTGTG
TCCATGATGTCACCGAACACGGCCGAGCGCTCCAACGACACATACACTTGCACAGCAAAT
AATGGAATAGGAGTAGCAGTACAGAGCACCATTACTGCTGGGGAGGCATCAGCTGTCATT
GTTGTGACAAAAGAAAGCAATGTTGGAATAATGGTTGGAGCAATCATTGGAAGTTTGGTT
GTCCTTGCGATCATTATTGCTCTCATCTACTTCTTCATCATAAAACCTGCCAGAGAAAAA
GATACAGGGCCCTATGACCAAACTATACAACCTTTTAAAGCAGACAGCCGACAATCGAGT
GGTCGATTTGAATCCACTTCAAGGTCGCGACCTTTAATCGAACACGCGAACGAGAGCTTA
AACCAAAACCGACCCCCTAGTCCCAACCAACCTCCACCTGAAGATGTTCCCGATAGTGGC
AGCAGTGACTCTGATTCAAGCGAGGGCAACCATGATGTAGATTTTGATGTTGATCCTTCA
ACAAACTTGGTGGATCGACCAGGAGAACCAGCCGGCATCACCAGCAGGGCATCTGTCAAT
TTCCAGGCGCGCCGCAAGCGACCCAGCACCTCCCCAGCCTCCCGTCGAAGCCGTATTGAA
CCCAAACAAGAAGAATCTCCGTCCCCCGCCCCACGTCAGCAACAGCCGAGGTACGACTAC
CCACCGGAGGGCAGCAGCTACGACGAAAATGACCAGGAATCCCCAACCCTCCAATACAAC
AGACACGGATATCCAGATGAAGAATTTTCCGATCCTTACCATCAACCTGCATTTGTTCAA
TACCCACCTGAACCCCACCAACCACCCCGTAGAACAGACAGCTTACCACAATATGAACCC
AAATATACTGAAATTGATCATGGCAACTATAAAAAGGGCACAGGCCAACGAAGACCACAA
TATGAAGAGCCAGTGGAGTACGCACAGATCAGACATGGGTATTCACACGTTGTATAAACT
TAAGCATTTGCTATATAAAAATAGTGCTACACGCTAACTGAAACTTTGTGCAGAACTTTT
AGTAAACCACATATAAATGCACTTGGTCTAAAGATTTTCTGTTTAGTTTAAAAAAAGAAA
CAGAAAACACATACGGAAAACATCATTTTTCATTACAACAGCAAGTCTCAACAGCTATAT
CAGATTAGCTTTGAAACTTTTTCTAACTTTGTTTTATAAAAACTGTACCAAACAAATTGT
ATTCATATATTTTCTTCCAACTGTACGTTGCTTTTATGTTTTTCAAACTACATATCAAAG
TGACAGGTGCTACCCTAATGACATTATTATAGTTTCTGATGGTACTATCATGGTTTCTGT
TAACTTCATTATGTTTTTTTACAATGTGATTAAAGTTTTTATGATATCATGATTTTTTAC
CGTAGTAACTGGTTTAATACTTTCATACAATGCTGCAGACCTAGAAGCAGCTGAGCTTAA
TTTTTAGCAGTTCAGATACCTTTACCAAAGCCACCAGCTTTGCATTTCTGCCTTGCTCAA
ATGTTGTAGGTTCTAGGTTTCTCTCAAAACGTTTTAATAATCTAGTCGCACATTTGGAAC
TACGATTTTTGTGTAAATAACAATTTGTGTTGATCAAGTTTGCTTTGTATATGTTTTTAT
CT
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[21-115] 1.7E-5 - T[156-236] 6.46E-7 - T[238-310] 1.84E-7 |
| Gene3D |
Ig-like_fold (IPR013783) - T[21-129] 3.2E-7 - T[142-234] 9.0E-16 - T[235-313] 5.8E-8 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[132-233] 9.246 - T[236-312] 9.047 |
| Pfam |
CD80_C2-set (IPR013162) - T[151-219] 3.0E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|