- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C10.59.v1....'
Transcript Model
Transcript Id
KH2012:KH.C10.59.v1.A.nonSL2-1
Possible name(s)
CADM4; NECTIN1; NECTIN3
Gene model
Location
KhC10 [2,527,624 / 2,544,769]
Amino acid sequence
Length: 607
>KH.C10.59.v1.A.nonSL2-1
ITMILRRIFIPRILKAALLLGCFCCYGVHGTNVIQGESAFIPCYNPETASQFPNMLVILE
FQPTPTAPQQLVSHYQPAQLKDPVVFATGSRYRGRLQFMNTGQLEIKFISLPDEGTFTCT
AQVYSLAPSKIITSVIVYVAPQFEVRKVNDPLLISDGGTMVNAAECIASNGKPPAVVFWG
TNRHLDFDQTATNSSTTPLLTTAVSTLHVEPTKFYNKQSFYCEMRHPSIPNSKRETIYLN
VTYPPETPTITVTADGLSLTCISHANPPATISWLLPASAPSRTFMGPTVSMMSPNTAERS
NDTYTCTANNGIGVAVQSTITAGEASAVIVVTKESNVGIMVGAIIGSLVVLAIIIALIYF
FIIKPAREKDTGPYDQTIQPFKADSRQSSGRFESTSRSRPLIEHANESLNQNRPPSPNQP
PPEDVPDSGSSDSDSSEGNHDVDFDVDPSTNLVDRPGEPAGITSRASVNFQARRKRPSTS
PASRRSRIEPKQEESPSPAPRQQQPRYDYPPEGSSYDENDQESPTLQYNRHGYPDEEFSD
PYHQPAFVQYPPEPHQPPRRTDSLPQYEPKYTEIDHGNYKKGTGQRRPQYEEPVEYAQIR
HGYSHVV
Nucleotide sequence
Length: 2,497
>KH2012:KH.C10.59.v1.A.nonSL2-1
AAAAGTAAATAACCATGATTTTAAGGCGGATATTTATTCCAAGAATACTCAAAGCAGCGC
TTCTGTTGGGTTGTTTTTGTTGCTATGGAGTGCATGGAACTAATGTAATACAGGGTGAGT
CGGCTTTCATCCCATGTTACAACCCTGAAACTGCCTCACAGTTTCCGAACATGTTGGTTA
TATTAGAATTTCAACCAACACCAACTGCTCCTCAGCAGCTAGTTAGCCATTACCAGCCTG
CTCAGCTCAAAGACCCAGTTGTGTTTGCGACTGGTAGTCGATATAGAGGACGCCTACAAT
TCATGAACACTGGTCAGCTTGAGATTAAATTCATCAGCTTACCTGACGAGGGAACTTTCA
CATGCACAGCACAAGTATACTCACTTGCACCAAGCAAGATTATAACATCTGTCATTGTTT
ATGTTGCCCCTCAGTTTGAGGTTAGAAAAGTAAATGATCCTCTACTAATTAGTGATGGTG
GCACGATGGTCAATGCTGCAGAATGCATTGCTAGTAATGGTAAGCCACCAGCTGTGGTTT
TCTGGGGCACAAACCGTCACCTAGATTTCGACCAAACTGCTACAAACAGCAGCACAACAC
CCCTTCTCACAACTGCAGTGTCTACACTTCATGTTGAACCAACCAAATTCTACAACAAAC
AATCCTTCTACTGTGAGATGAGACATCCCTCCATTCCCAACAGCAAGCGAGAAACCATAT
ACCTTAATGTTACTTACCCTCCAGAAACCCCCACCATCACAGTAACTGCTGATGGCTTGA
GTCTTACATGTATTTCCCATGCTAACCCTCCGGCAACTATATCATGGTTGTTGCCAGCGT
CGGCACCTTCGCGCACTTTTATGGGTCCAACTGTGTCCATGATGTCACCGAACACGGCCG
AGCGCTCCAACGACACATACACTTGCACAGCAAATAATGGAATAGGAGTAGCAGTACAGA
GCACCATTACTGCTGGGGAGGCATCAGCTGTCATTGTTGTGACAAAAGAAAGCAATGTTG
GAATAATGGTTGGAGCAATCATTGGAAGTTTGGTTGTCCTTGCGATCATTATTGCTCTCA
TCTACTTCTTCATCATAAAACCTGCCAGAGAAAAAGATACAGGGCCCTATGACCAAACTA
TACAACCTTTTAAAGCAGACAGCCGACAATCGAGTGGTCGATTTGAATCCACTTCAAGGT
CGCGACCTTTAATCGAACACGCGAACGAGAGCTTAAACCAAAACCGACCCCCTAGTCCCA
ACCAACCTCCACCTGAAGATGTTCCCGATAGTGGCAGCAGTGACTCTGATTCAAGCGAGG
GCAACCATGATGTAGATTTTGATGTTGATCCTTCAACAAACTTGGTGGATCGACCAGGAG
AACCAGCCGGCATCACCAGCAGGGCATCTGTCAATTTCCAGGCGCGCCGCAAGCGACCCA
GCACCTCCCCAGCCTCCCGTCGAAGCCGTATTGAACCCAAACAAGAAGAATCTCCGTCCC
CCGCCCCACGTCAGCAACAGCCGAGGTACGACTACCCACCGGAGGGCAGCAGCTACGACG
AAAATGACCAGGAATCCCCAACCCTCCAATACAACAGACACGGATATCCAGATGAAGAAT
TTTCCGATCCTTACCATCAACCTGCATTTGTTCAATACCCACCTGAACCCCACCAACCAC
CCCGTAGAACAGACAGCTTACCACAATATGAACCCAAATATACTGAAATTGATCATGGCA
ACTATAAAAAGGGCACAGGCCAACGAAGACCACAATATGAAGAGCCAGTGGAGTACGCAC
AGATCAGACATGGGTATTCACACGTTGTATAAACTTAAGCATTTGCTATATAAAAATAGT
GCTACACGCTAACTGAAACTTTGTGCAGAACTTTTAGTAAACCACATATAAATGCACTTG
GTCTAAAGATTTTCTGTTTAGTTTAAAAAAAGAAACAGAAAACACATACGGAAAACATCA
TTTTTCATTACAACAGCAAGTCTCAACAGCTATATCAGATTAGCTTTGAAACTTTTTCTA
ACTTTGTTTTATAAAAACTGTACCAAACAAATTGTATTCATATATTTTCTTCCAACTGTA
CGTTGCTTTTATGTTTTTCAAACTACATATCAAAGTGACAGGTGCTACCCTAATGACATT
ATTATAGTTTCTGATGGTACTATCATGGTTTCTGTTAACTTCATTATGTTTTTTTACAAT
GTGATTAAAGTTTTTATGATATCATGATTTTTTACCGTAGTAACTGGTTTAATACTTTCA
TACAATGCTGCAGACCTAGAAGCAGCTGAGCTTAATTTTTAGCAGTTCAGATACCTTTAC
CAAAGCCACCAGCTTTGCATTTCTGCCTTGCTCAAATGTTGTAGGTTCTAGGTTTCTCTC
AAAACGTTTTAATAATCTAGTCGCACATTTGGAACTACGATTTTTGTGTAAATAACAATT
TGTGTTGATCAAGTTTGCTTTGTATATGTTTTTATCT
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[30-124] 1.76E-5 - T[165-245] 6.5E-7 - T[247-319] 1.9E-7 |
| Gene3D |
Ig-like_fold (IPR013783) - T[30-138] 3.3E-7 - T[151-248] 8.9E-16 - T[249-332] 1.0E-7 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[141-242] 9.246 - T[245-321] 9.047 |
| Pfam |
CD80_C2-set (IPR013162) - T[160-228] 3.1E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|