- Transcript 'KH2012:KH.C10.367.v1...'
Transcript Model
Transcript Id
KH2012:KH.C10.367.v1.A.ND1-1
Possible name(s)
SIX1; SIX3; SIX6
Gene model
Location
KhC10 [809,959 / 812,548]
Amino acid sequence
Length: 406
>KH.C10.367.v1.A.ND1-1
MAETVAQRASSPIVMSSQSSLSPSSSIAKLFSGAANSRSMFGGMGSNPRPDIVAAAAALR
HMINQNLLQQPASQSPNPLLPFPALTFSPSQIATVCESLQESGDIERLARFLWSLPAAPG
VLEVLNTNEVVLRARAIVAFHQGHYRDLYAILETHRFTEKDSHGKLQAMWLEAHYQEAAK
LRGRPLGPVDKYRIRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLRDPYPNPSKKKEL
AHATGLTPTQVGNWFKNRRQRDRAAAAKNNRQQNQLSPQPRSKTTSPTSYQNELLRHYGT
HNDPSAMFWAVGKFPGFPMTVPHFQRPTYIDKGDSPTGSTFSSPSFLPTPPMTSLHRLNT
SSPKAESDSGSVSPISSHYDKRIESDDITNEDNFPEADTASQSPKD
Nucleotide sequence
Length: 1,309
>KH2012:KH.C10.367.v1.A.ND1-1
ATGGCGGAGACTGTTGCCCAGCGCGCCTCTTCGCCTATAGTTATGTCTTCACAGAGCTCA
CTGTCTCCGAGTTCTAGCATAGCAAAACTTTTCAGCGGAGCAGCTAACTCAAGAAGCATG
TTCGGGGGGATGGGTTCGAACCCTAGACCGGACATCGTAGCAGCGGCCGCAGCGTTAAGG
CATATGATCAACCAAAATCTGCTTCAGCAACCGGCAAGCCAATCACCCAACCCTTTGCTA
CCTTTCCCGGCTCTCACTTTCAGCCCCTCGCAAATCGCAACAGTTTGTGAAAGTTTGCAA
GAAAGCGGTGATATTGAGAGGTTAGCCCGATTCCTGTGGTCACTTCCAGCAGCTCCTGGA
GTCTTGGAGGTTTTAAACACCAACGAGGTGGTTCTAAGAGCGCGGGCAATTGTTGCGTTT
CACCAGGGCCATTATAGAGACTTGTACGCCATTTTGGAAACGCATCGATTCACTGAAAAG
GACTCCCATGGAAAGTTACAGGCAATGTGGCTTGAAGCTCATTACCAAGAAGCTGCTAAA
CTAAGAGGAAGGCCCTTAGGCCCGGTAGATAAATACAGAATCCGAAAGAAATTTCCTTTG
CCGAGGACAATTTGGGACGGGGAGCAAAAAACACATTGTTTTAAGGAACGAACCCGAAGC
CTGTTACGTGAATGGTACCTACGTGACCCTTACCCTAACCCAAGCAAGAAGAAAGAGCTT
GCTCATGCAACAGGACTTACACCAACTCAAGTTGGAAATTGGTTCAAAAACAGAAGGCAA
CGAGACAGAGCTGCTGCCGCAAAGAACAATCGTCAACAGAACCAGTTAAGCCCACAACCT
AGAAGCAAAACCACCTCTCCTACGTCATACCAAAACGAATTGTTACGTCACTATGGCACC
CACAACGACCCATCAGCAATGTTTTGGGCAGTGGGTAAATTCCCAGGTTTCCCCATGACA
GTACCCCATTTCCAACGACCCACCTATATCGATAAAGGGGATTCACCAACCGGAAGCACT
TTCTCTTCCCCTTCTTTCCTTCCAACCCCTCCGATGACGTCATTGCACCGACTCAATACG
TCATCACCGAAAGCGGAAAGCGACTCCGGTTCGGTGTCTCCAATCTCTAGTCATTATGAC
AAAAGAATAGAAAGTGATGACATAACAAACGAAGACAATTTCCCGGAAGCAGACACAGCG
AGTCAGAGCCCGAAAGACTAAAGTTTTAAAAACTGTTTTCTTGGTCATGAGACTCGCCGT
ACATTCTTGCACTCGTTATTATTATTGCTCGTGTATCGTGTCGGTATAT
| Pfam |
SIX1_SD (IPR031701) - T[87-202] 1.6E-43 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[205-265] 4.18E-16 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[205-265] 14.673 |
| SMART |
Homeobox_dom (IPR001356) - T[208-269] 2.7E-14 |
| CDD |
Homeobox_dom (IPR001356) - T[209-257] 1.95286E-12 |
| Pfam |
Homeobox_dom (IPR001356) - T[212-263] 4.4E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SIX1_HUMAN | 59.903 % | 265 | 4.7E-87 |
| SIX6_HUMAN | 79.899 % | 323 | 4.21E-110 |
| SIX3_HUMAN | 78.5 % | 326 | 3.07E-110 |