Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C10.10.v1.A.nonSL23-1

Possible name(s)

FAU; RPS27A; UBB

Gene model

KH2012:KH.C10.10

Location

KhC10 [827,281 / 828,009]

Sequences

Amino acid sequence

Length: 129

>KH.C10.10.v1.A.nonSL23-1
LKTNELHCVQVDSGDLVSNLKAQINAIEGIATEDQVLSYNGITLDDDLSLEAAGLNDLST
VQVLGRVLGGKVHGSLARAGKVKGQTPKVEAQEKKKKKTGRAKRRMQYNRRFVNVVATFG
RRRGPNANS

Nucleotide sequence

Length: 728

>KH2012:KH.C10.10.v1.A.nonSL23-1
TTTGAAAACAAATGAGTTGCACTGCGTGCAGGTCGATAGTGGAGACCTCGTGTCTAACCT
AAAGGCCCAAATCAACGCGATTGAAGGTATCGCAACCGAAGACCAAGTATTAAGCTACAA
TGGAATTACGTTGGACGACGATTTGAGCTTGGAAGCTGCTGGTTTAAACGACCTTTCCAC
TGTTCAAGTTTTGGGACGCGTACTTGGAGGTAAAGTGCACGGTTCTTTGGCACGTGCTGG
TAAAGTGAAGGGTCAAACACCAAAAGTTGAGGCCCAAGAAAAGAAGAAAAAGAAGACTGG
CCGAGCCAAACGTCGCATGCAATACAACAGGAGATTCGTGAATGTTGTTGCCACCTTTGG
TCGTCGACGTGGACCAAACGCCAACTCCTAAACTGTTTGTCCAATTTCTGCTATCTCGTG
TATGTTGAATCATATGTAAAGTAGCAGATAATAAATAAAAAAACGAAACCACCTAATTAT
GTCTTTTATCCAAAACAAAAGCGATTCAGTTTACTATTGTCATGATATCTCTTAAAAACT
ATTTTGTTACATAGAACTTCCACTGTAAGATTTCACTGCATGTTTAAACAGTCATTGTAT
AGTATCTCCATGTCTACTTATCTTCCTGTACAAAATCCCTGCACAATAATATATGCTTTT
ACCTAATAACTATATTCTCAAGAAGTAAACCGGTTATAGGGTTGTGTGTATTAAAGAAAA
ACACAAAG

InterProScan

SMART	Ubiquitin_dom (IPR000626) - T[1-66] 1.6E-6
ProSiteProfiles	Ubiquitin_dom (IPR000626) - T[1-70] 15.601
SUPERFAMILY	Ubiquitin-like_domsf (IPR029071) - T[3-84] 2.21E-15
Pfam	Ubiquitin_dom (IPR000626) - T[5-66] 3.0E-12
Pfam	Ribosomal_S30 (IPR006846) - T[71-128] 1.7E-29

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RS30_HUMAN	88.136 %	90.1	3.61E-25