Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C10.10.v1.A.nonSL21-1

Possible name(s)

FAU; RPS27A; UBB

Gene model

KH2012:KH.C10.10

Location

KhC10 [827,281 / 828,013]

Sequences

Amino acid sequence

Length: 130

>KH.C10.10.v1.A.nonSL21-1
FLKTNELHCVQVDSGDLVSNLKAQINAIEGIATEDQVLSYNGITLDDDLSLEAAGLNDLS
TVQVLGRVLGGKVHGSLARAGKVKGQTPKVEAQEKKKKKTGRAKRRMQYNRRFVNVVATF
GRRRGPNANS

Nucleotide sequence

Length: 732

>KH2012:KH.C10.10.v1.A.nonSL21-1
TATTTTTGAAAACAAATGAGTTGCACTGCGTGCAGGTCGATAGTGGAGACCTCGTGTCTA
ACCTAAAGGCCCAAATCAACGCGATTGAAGGTATCGCAACCGAAGACCAAGTATTAAGCT
ACAATGGAATTACGTTGGACGACGATTTGAGCTTGGAAGCTGCTGGTTTAAACGACCTTT
CCACTGTTCAAGTTTTGGGACGCGTACTTGGAGGTAAAGTGCACGGTTCTTTGGCACGTG
CTGGTAAAGTGAAGGGTCAAACACCAAAAGTTGAGGCCCAAGAAAAGAAGAAAAAGAAGA
CTGGCCGAGCCAAACGTCGCATGCAATACAACAGGAGATTCGTGAATGTTGTTGCCACCT
TTGGTCGTCGACGTGGACCAAACGCCAACTCCTAAACTGTTTGTCCAATTTCTGCTATCT
CGTGTATGTTGAATCATATGTAAAGTAGCAGATAATAAATAAAAAAACGAAACCACCTAA
TTATGTCTTTTATCCAAAACAAAAGCGATTCAGTTTACTATTGTCATGATATCTCTTAAA
AACTATTTTGTTACATAGAACTTCCACTGTAAGATTTCACTGCATGTTTAAACAGTCATT
GTATAGTATCTCCATGTCTACTTATCTTCCTGTACAAAATCCCTGCACAATAATATATGC
TTTTACCTAATAACTATATTCTCAAGAAGTAAACCGGTTATAGGGTTGTGTGTATTAAAG
AAAAACACAAAG

InterProScan

ProSiteProfiles	Ubiquitin_dom (IPR000626) - T[1-71] 15.71
SMART	Ubiquitin_dom (IPR000626) - T[1-67] 1.4E-7
SUPERFAMILY	Ubiquitin-like_domsf (IPR029071) - T[4-85] 1.8E-15
Pfam	Ubiquitin_dom (IPR000626) - T[5-67] 2.2E-12
Pfam	Ribosomal_S30 (IPR006846) - T[72-129] 1.7E-29

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RS30_HUMAN	88.136 %	89.7	4.74E-25