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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C10.10.v1....' > 
  2. Clone 'cicl030m04' > 
  3. Region 'REG00001406' > 
  4. Clone 'AHC0AAA9YK21' > 
  5. Transcript 'KH2012:KH.C10.10.v1....'

Transcript Model

Transcript Id

KH2012:KH.C10.10.v1.A.nonSL18-1

Possible name(s)

FAU; RPS27A; UBB

Gene model

KH2012:KH.C10.10

Location

KhC10 [827,281 / 828,049]

Sequences

Amino acid sequence

Length: 142

>KH.C10.10.v1.A.nonSL18-1
CLKGFNSTNMQIFLKTNELHCVQVDSGDLVSNLKAQINAIEGIATEDQVLSYNGITLDDD
LSLEAAGLNDLSTVQVLGRVLGGKVHGSLARAGKVKGQTPKVEAQEKKKKKTGRAKRRMQ
YNRRFVNVVATFGRRRGPNANS

Nucleotide sequence

Length: 768

>KH2012:KH.C10.10.v1.A.nonSL18-1
CTTGTTTAAAAGGGTTTAATTCAACCAATATGCAGATATTTTTGAAAACAAATGAGTTGC
ACTGCGTGCAGGTCGATAGTGGAGACCTCGTGTCTAACCTAAAGGCCCAAATCAACGCGA
TTGAAGGTATCGCAACCGAAGACCAAGTATTAAGCTACAATGGAATTACGTTGGACGACG
ATTTGAGCTTGGAAGCTGCTGGTTTAAACGACCTTTCCACTGTTCAAGTTTTGGGACGCG
TACTTGGAGGTAAAGTGCACGGTTCTTTGGCACGTGCTGGTAAAGTGAAGGGTCAAACAC
CAAAAGTTGAGGCCCAAGAAAAGAAGAAAAAGAAGACTGGCCGAGCCAAACGTCGCATGC
AATACAACAGGAGATTCGTGAATGTTGTTGCCACCTTTGGTCGTCGACGTGGACCAAACG
CCAACTCCTAAACTGTTTGTCCAATTTCTGCTATCTCGTGTATGTTGAATCATATGTAAA
GTAGCAGATAATAAATAAAAAAACGAAACCACCTAATTATGTCTTTTATCCAAAACAAAA
GCGATTCAGTTTACTATTGTCATGATATCTCTTAAAAACTATTTTGTTACATAGAACTTC
CACTGTAAGATTTCACTGCATGTTTAAACAGTCATTGTATAGTATCTCCATGTCTACTTA
TCTTCCTGTACAAAATCCCTGCACAATAATATATGCTTTTACCTAATAACTATATTCTCA
AGAAGTAAACCGGTTATAGGGTTGTGTGTATTAAAGAAAAACACAAAG

InterProScan

ProSiteProfiles
Ubiquitin_dom (IPR000626) - T[10-83] 17.234
SMART
Ubiquitin_dom (IPR000626) - T[10-79] 2.7E-12
SUPERFAMILY
Ubiquitin-like_domsf (IPR029071) - T[10-97] 7.6E-17
Pfam
Ubiquitin_dom (IPR000626) - T[12-79] 9.1E-13
Pfam
Ribosomal_S30 (IPR006846) - T[84-141] 2.1E-29

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RS30_HUMAN 88.136 % 89.7 7.11E-25
UBIM_HUMAN 41.892 % 67.8 5.24E-16