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TRANSCRIPT CARD

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  1. Transcript 'Cisavi.CG.ENS81.R151...'
  2. Transcript 'Boleac.CG.SB_v3.S85....'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S85.g14739.01.t

Possible name(s)

SDC1; SDC2; SDC4

Location

S85 [246,188 / 251,829]

Sequences

Amino acid sequence

Length: 185

>Boleac.CG.SB_v3.S85.g14739.01.p
MKRVILFTLLCVAFVGASEAQFESEDIDFEASGEARTTDDPFRDDEDLGEESEGSGELPV
DPDDGGEVTFVDTTESTTTTTTEKKESHTQEPVAETDPDKGVSDEVKDPDDGSVAVAATP
SIQFLAAVIVGGCIGLLFAICVIMLLVYRMRKKDEGSYALDYGLDKKPQGNYEYTKGVDS
KEYFA

Nucleotide sequence

Length: 2,201

>Boleac.CG.SB_v3.S85.g14739.01.t
ACTTGCAACTATTCACAGTGAAATATTTTTTATAAGTAGAGGCNGCGCGTNACACGTTAC
CAGTGTGTGTTAGTCAACGTTTTCAGCATTGGAGTACACTCTATCTGTGGAATTATTGTT
TGGATTATATACTATTTTTGAANGCAAATTCCTAATTTGGAGTACCGGTACCAGTATGAA
GCGAGTCATCCTCTTTACCCTTCTATGCGTGGCATTTGTTGGAGCTTCTGAGGCTCAATT
TGAGAGTGAAGATATAGACTTTGAAGCATCGGGAGAAGCGCGTACTACTGATGACCCCTT
TAGAGATGATGAAGACTTGGGTGAAGAGTCGGAAGGATCAGGTGAACTGCCTGTAGACCC
GGACGATGGTGGAGAAGTGACCTTTGTGGATACGACAGAATCAACAACTACTACCACTAC
AGAAAAGAAAGAAAGCCACACCCAGGAGCCAGTTGCTGAGACTGACCCTGATAAAGGTGT
TTCTGATGAAGTAAAAGATCCTGATGACGGCAGTGTGGCTGTTGCTGCGACGCCATCGAT
CCAATTCCTAGCTGCTGTAATTGTGGGTGGCTGCATTGGCCTTCTGTTTGCTATCTGTGT
CATCATGCTTCTGGTTTACCGGATGCGCAAAAAGGATGAAGGAAGTTATGCCCTGGATTA
TGGTTTGGATAAAAAGCCTCAAGGCAACTATGAATACACCAAAGGTGTCGATAGTAAGGA
ATATTTTGCGTAAACTGAACCGGGATAGAGCTATAGACCTGTGTCGTGTGGTCTAATTTC
AAGTAGAACTGATTTCTCTCAATCAGCAGTATTGGGCGGTCGTTCCTTACACTTGAACTG
TCCATATTTCCATCTTGTCAGTATAAATGATATTTGCAATTGGAAAGGTATAAGGTGCTT
GACTCAACATGTAATATGTGTCGAGTTGTAACTGAAGCCTGCGATACATTTTATTCCGCT
TATGCTTTCATATATTCTTCCTAATGAAACTGATCGTAATGGTTTTGCCACTGATATGTG
AAACGCAAAGTTCGTTACATTACTCTAGTACAAGTGGAAAGGTCTTACCGTAGCTTCATG
CTTTAGTGAAGGTATGGTCACAGCGATGATATTTCTGCGTAGAACATTTTGTTTTGTTTT
TCTATGAGTTTTTATGTAAATATCTTATTTTGCAACATTTTGTCATCGGTACGCAAGTGC
ACATGATGTCTGGATCCAACTTATTTTCGCACGTACGGTGTTAACCCTCTTCAAACGCCT
CTTGTTTCTGTCCCATTACTTCTCCAGTGTCGGTACATTTGAGAATTATCCCAAATTGGG
AAGNTTCGCATTTTAGGCGNAACTAATCAGTTCGACTGGGTACATGTTGTATCTTCGTTA
TAATTCCATCTCAGATGCTCGTGTGTGTGCCTTTCAATTGCTTAATGGAGTATGGTATGA
TTTTGGATGAATGGAAGTATAGTCTACTTGCGGATACACGAGCTACCTCTTTTGGAATTG
TTTTTGTTTTCACTAATGGAATGATCTTTGATTATTAATAATAAAGAGAGGGATCCTAAC
TACNCTCAGCAGTTTTTTGATGTTGGGAGTTTTCTTTGTGTTCAGCCTGCCCTTGTCGAC
GTATTATTCCTATTCATCCTTCTACTTATTAGCTCATTGCTTTCAACAGGTTCTGTACCA
TCAGAAATATTTATTTTATGGTCCAACTGTAACGTGATTGATCTTGTATTGAAACGGCCA
AATTAGATAATTTTGCTACGCCAATGAAGGCTTTATAAAACAGAGTATTCCGTTTGAATA
AAGCTGATGTATTCAAGTGATACCTACCGTTGTATGGTTCGGGCTGTTGTCGAAGAAGTC
TCATAGCGTTAAACTCTCAAATGGGTTGGAGTGTATGTGCGGCTGTGCTGGTAAAGTAGG
TTGNGTGTTGAGACTGTATTTCCCAAGGTTTCAGTACATCTCGTACATAATGTTGGTGGC
TTAATTTTTAACCTGAACGAAATNCGTCTTACACGACTAGTGTGTAAACTGCCTAGTACT
GTGATGTGAAGATGAATCATAGGGTTCAGAATGGTGTCATACGATCGTACCAACAAAACG
CGACATGAACATGTTATCCTGATGGAATGTTCGCTGCTCAAAGCGAGCTTTTTGGTGTCG
TCGTCTTTTGTTCCTCCTCGCGATGTGAATAAAAGTTGCCG

InterProScan

PANTHER
Syndecan (IPR001050) - T[37-185] 3.0E-29
PANTHER
Syndecan_inverte (IPR031198) - T[37-185] 3.0E-29
Pfam
Syndecan/Neurexin_dom (IPR027789) - T[123-177] 1.4E-21
ProSitePatterns
Syndecan_CS (IPR030479) - T[148-158] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SDC4_HUMAN 34.597 % 71.6 9.63E-16