- Transcript 'Boleac.CG.SB_v3.S712...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S712.g13478.01.t
Possible name(s)
CHAD; FLRT1; LRRC70
Gene model
Location
S712 [21,089 / 28,684]
Amino acid sequence
Length: 467
>Boleac.CG.SB_v3.S712.g13478.01.p
MDGRGFAIILVIYVVLATGKRPVKKCPRKGAYADCMEGGDRTLWCDMSNYASLNEISTSG
IDLSAIVTLYLNDSCLRVLHAGSKLQHFPDLTSLKLDDNFIKEIPEHIFAGNPNLQKVDL
STNNIKSIHRRAFRGLRKLRILSIDNNEIIYLRGDWFHDLTALRNLSLSRNGVRRLRRGH
LQTLRSLTSLNLKDNLISVIEAHAFHGLSELQELHLDGNLLTDIEIGTFDGLQSLQVLTL
SSNKISSWSMVQSPSLHHIGRAAKDSSVLSDVFGNLCNLGYVNLRNNNLTYLNPNWLRER
GNRDIVIDLRQNPWECRCEALEFKKELNMNRNNVQVTEIVCQTPKYAKKRNLLDQDLVEE
IEFRTKCNSDASTSKNPSTVTRCNSTNDDIPMRKFTLHGLLQSIDQDIDDARLPVFTPTK
LPSAPGFANALVLLTTEGNGSYSMHPSACRYLPIFITTVYKLINLFQ
Nucleotide sequence
Length: 2,037
>Boleac.CG.SB_v3.S712.g13478.01.t
GGATATTTCAGTTCCGCTTCCCTATTTCATACGAACATTGCAAGTCGGCAAGCGCTTCGT
TGGTTGCATCACCAGCAGGTGTCAAATCGTCTAGAATGGATGGACGGGGTTTCGCAATAA
TCCTGGTGATTTATGTTGTGCTTGCGACAGGGAAAAGGCCGGTCAAAAAGTGTCCAAGGA
AAGGGGCGTATGCTGATTGCATGGAGGGTGGGGATAGGACGCTATGGTGCGACATGTCCA
ATTACGCCAGTCTCAACGAGATCTCTACCTCAGGAATTGATTTGAGCGCGATCGTGACTT
TGTATTTAAACGACAGCTGCTTGCGGGTTTTGCACGCAGGATCGAAATTGCAACACTTTC
CGGATCTTACCAGCTTGAAACTGGACGATAATTTCATTAAAGAAATTCCCGAACATATTT
TTGCTGGAAATCCAAATTTGCAAAAAGTGGATTTGAGCACCAACAATATAAAGTCGATTC
ACAGACGAGCCTTTAGAGGATTGCGAAAACTGCGAATACTTTCGATCGATAACAACGAGA
TAATTTATTTGAGAGGGGACTGGTTTCACGACCTGACAGCACTTCGTAATCTGAGCTTGA
GTCGGAACGGAGTGAGACGTCTTAGGAGGGGACATCTTCAGACCTTAAGAAGTTTGACTT
CACTCAATCTGAAAGATAACCTAATCAGTGTCATCGAAGCTCATGCATTTCATGGCTTGT
CAGAGCTACAGGAGCTTCATCTCGATGGAAACTTGCTAACTGATATCGAGATCGGAACTT
TCGATGGTCTGCAAAGTCTTCAAGTCCTTACACTTTCTTCTAATAAGATATCAAGCTGGT
CTATGGTTCAATCGCCTTCGTTACACCATATTGGTCGGGCGGCTAAAGACTCGAGTGTAC
TCTCTGATGTGTTTGGCAACCTGTGCAATCTTGGATACGTGAACCTACGAAATAATAACC
TTACATATTTGAACCCTAATTGGCTTCGTGAACGAGGAAACCGCGATATTGTCATCGATT
TAAGACAAAATCCATGGGAATGTCGATGCGAAGCGCTGGAATTCAAGAAAGAACTCAACA
TGAACAGAAATAACGTACAAGTTACAGAGATCGTCTGTCAAACACCAAAGTATGCCAAGA
AGAGAAACCTTTTAGACCAGGACTTGGTTGAGGAGATCGAGTTCAGAACGAAATGCAACT
CGGACGCTTCTACTTCAAAGAATCCATCAACAGTGACGCGATGCAACTCTACAAATGACG
ATATACCAATGAGGAAATTTACACTACACGGTTTACTTCAAAGTATAGATCAAGACATTG
ACGATGCCCGACTTCCAGTTTTTACTCCTACAAAACTACCAAGCGCCCCTGGTTTTGCCA
ATGCATTAGTATTACTCACTACTGAAGGGAACGGGTCCTATTCCATGCACCCTTCTGCGT
GTAGGTATTTGCCTATATTCATTACCACTGTTTACAAGTTGATTAATTTATTTCAATAAT
TTGCCAAATTTTAGGTTGTGTTTATTAGTTCGTGATGAAACTTAATCCTGGATTAGTGAT
CTCGAATTAACTCTTTACATGGACGAGAAGCAGTTAAGATTCACTAAACTCAGTTTAAAT
TTTCAGCTCAAACATTTCGATTTTCAGCCTCGATTTTTCGAAACTCACCGTAAAAACGTG
GTAGGCTTCGGTAAACTTCTAACCTTTACCCCCTATCCGCGCTCTAGGAGAGAATCTTGC
ACTCACTGTATTTTGTAAATATTCCTCTGTGCTCACTGTCAGAAGAAACGCCTACGTTCA
ATGTAAACAAAACTTATTGATCGATATTTGTTGAAAATCTCCAAAACTTGAATCGTATAG
CAGTTCACTATTAGCCTGTCCCTATATCATATGCCCATACCGATGTAGGTAGAGGTGGAT
TGTCCTACAGGATATTGCGAATAAAATTTTTCTTATGTCGGTGTGCTTTTGTTGATCTTA
TTTGATGTTTTTGGATTTGCGACTTTTGTCTCTTTTGTACAAAATTTTATAAACGAC
| Gene3D |
LRR_dom_sf (IPR032675) - T[19-145] 1.2E-16 - T[146-260] 2.0E-26 - T[264-373] 9.0E-15 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[88-111] 0.58 - T[113-135] 1.2 - T[136-159] 13.0 - T[160-183] 24.0 - T[184-207] 0.042 - T[208-231] 0.0031 - T[232-256] 41.0 - T[276-299] 20.0 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[90-149] 2.3E-16 - T[162-221] 4.5E-14 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[90-111] 6.811 - T[114-135] 6.657 - T[138-159] 5.525 - T[162-183] 5.178 - T[186-207] 6.973 - T[210-231] 6.626 - T[234-255] 7.134 - T[278-299] 5.356 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRR70_HUMAN | 27.941 % | 100 | 1.11E-22 |
| CHAD_HUMAN | 28.125 % | 97.8 | 2.13E-22 |
| FLRT1_HUMAN | 28.446 % | 102 | 3.24E-23 |
