- Transcript 'Harore.CG.MTP2014.S4...' >
- Transcript 'Boleac.CG.SB_v3.S624...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S624.g12513.01.t
Possible name(s)
HOXA1; HOXB1; HOXD1
Gene model
Location
S624 [23,943 / 35,256]
Amino acid sequence
Length: 502
>Boleac.CG.SB_v3.S624.g12513.01.p
MSSFMEYPVCSGDPYAVRPASNMMYNPVDGLASFNVKRSVSSEESVGSASPMYSCVMHDS
TVLRKATDETLTQVDTSGEQTYTRLSHQISQPNMYELQQQHYSTREAIGPQAATPSPNSS
SPPISESFNHPSPQQTPLSPPIYPTISNTSTYSTNLMGPYSSGYPYSAPLKTDPASSIYS
LNPTSPYPTSPNQSGAAPNSYSSCNPIMYSSNIHATSYPMHSQYSPCPVPINGHHSGLET
PIVGYFHSGNSHRRSPQELXDRDKLDSSTTSSTDMANTYDWMKIKRNPPKTTFYNHGKMD
PYGYATQVGNGRTNFTTKQLTELEKEFHFNKXLTRARRVEIAASLMLNETQVKIWFQNRR
MKQKKRDKEAEKLMKVNATAPSVKMASDEASFPTANCSPDKVTNSPAKQELESSNMRKSE
KSDTYPVYDATSQKSQRSPSTARFSPSSSASNSSSPDHALAQRHSTALNAAVNQIYETNE
PNLSDISSPAHAYSNGLLTTTL
Nucleotide sequence
Length: 1,644
>Boleac.CG.SB_v3.S624.g12513.01.t
TTCAGATATAGTAGGCTTTAGCTAAAGTGACGGAACACTGTTAGTTAGTTAGCCGGTGAT
ACATGAAAGTATAATCATATTAAAATAAAACAAGACCGAAGACTATTTGGATCTGAAATA
CCTATACTGACGGCAATGAGTTCGTTTATGGAATATCCCGTGTGTTCTGGAGACCCTTAC
GCGGTTCGACCAGCGTCCAATATGATGTACAATCCAGTTGATGGACTTGCCTCGTTTAAC
GTGAAAAGATCAGTTTCCAGTGAAGAAAGCGTGGGGTCCGCTTCTCCAATGTATTCTTGC
GTCATGCACGACTCTACTGTTTTGAGAAAAGCTACCGATGAAACCTTAACGCAAGTTGAC
ACAAGCGGCGAACAGACTTATACTCGACTTAGTCATCAGATATCGCAGCCAAATATGTAT
GAACTTCAACAACAGCATTATTCCACCCGTGAAGCAATAGGTCCACAAGCTGCTACTCCA
TCGCCGAATTCCTCGTCTCCACCTATCAGCGAAAGTTTCAACCATCCGTCCCCACAACAG
ACACCTCTTTCACCTCCTATTTATCCTACCATAAGCAACACATCGACTTATTCAACCAAT
CTAATGGGACCTTACTCAAGCGGGTATCCGTATAGCGCACCACTCAAAACCGATCCAGCT
TCTTCAATTTACTCTTTGAACCCGACTTCGCCATATCCTACATCCCCGAATCAGTCAGGT
GCCGCCCCGAATTCTTATTCGTCCTGTAATCCGATTATGTATTCAAGCAATATCCACGCC
ACTTCTTATCCTATGCACTCTCAGTATTCGCCCTGTCCCGTACCCATAAACGGACATCAT
TCTGGACTCGAAACGCCGATCGTTGGGTATTTTCATAGCGGGAATTCACATCGTCGTTCT
CCGCAAGAGCTTGNAGATAGAGACAAACTCGACAGTTCGACGACCTCAAGTACCGACATG
GCCAACACTTATGATTGGATGAAGATCAAACGAAACCCTCCCAAAACAACGTTCTACAAT
CATGGCAAAATGGATCCATATGGATATGCAACNCAAGTGGGNAACGGTCGAACAAATTTC
ACAACAAAGCAATTGACTGAACTGGAGAAAGAATTCCATTTTAACAAATANCTGACAAGG
GCCAGAAGAGTTGAAATCGCGGCGTCTCTCATGCTGAACGAAACACAGGTAAAGATTTGG
TTCCAAAATCGCCGAATGAAGCAAAAGAAGCGCGATAAAGAAGCAGAAAAATTAATGAAA
GTCAATGCAACGGCTCCGTCCGTGAAGATGGCGTCTGATGAAGCATCTTTTCCCACAGCC
AATTGCAGCCCCGATAAGGTTACAAACTCGCCCGCAAAGCAAGAGTTAGAAAGCAGCAAT
ATGAGAAAATCCGAAAAATCAGACACTTATCCCGTTTACGACGCGACGTCACAGAAGTCT
CAAAGATCACCGTCCACCGCAAGGTTTTCGCCATCATCTTCCGCATCAAATTCTTCTTCA
CCCGATCATGCACTGGCACAGCGACATTCTACGGCACTAAACGCGGCTGTCAATCAGATA
TATGAAACCAATGAACCTAATTTGTCTGATATTTCATCGCCAGCTCATGCGTACTCAAAC
GGTCTTCTTACAACAACTTTGTAA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[299-368] 2.31E-22 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[306-366] 19.467 |
| SMART |
Homeobox_dom (IPR001356) - T[308-370] 2.3E-23 |
| Pfam |
Homeobox_dom (IPR001356) - T[311-365] 3.9E-20 |
| CDD |
Homeobox_dom (IPR001356) - T[312-366] 6.43071E-23 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[330-341] 1.4E-5 - T[345-355] 1.4E-5 - T[355-364] 1.4E-5 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[341-364] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXA1_HUMAN | 49.758 % | 171 | 3.57E-49 |
| HXD1_HUMAN | 65.957 % | 133 | 4.26E-35 |
| HXB1_HUMAN | 56.716 % | 146 | 5.74E-40 |