- Transcript 'Haaura.CG.MTP2014.S2...' >
- Clone 'cicl005b13' >
- Transcript 'KH2012:KH.C2.14.v1.A...' >
- Transcript 'KH2012:KH.C4.26.v2.A...' >
- Transcript 'Boleac.CG.SB_v3.S5.g...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S5.g10788.01.t
Possible name(s)
COL21A1; ITGAX; MATN2
Gene model
Location
S5 [724,301 / 728,054]
Amino acid sequence
Length: 374
>Boleac.CG.SB_v3.S5.g10788.01.p
MGMTMAEVGENLLVCAPQWTYQCKKANLPLRMVGNCYVLNAQGFEYREPETLDSPYVRDC
PGELDVILLLDGSGSIGXRDFYIALAWVKDFLKSYREGLNNGEVHVGLIQYSGYTEESSC
DMGNLTRKLKVEMPLGSYNLSEATDIISRVVSLGHCTLTGDAINVTSEHFINRGRQNNVA
VMIVVTDGVSSDSVSEAANHARANGITVIAVGVGNKVDIKELDEIADSNQYRFNVSEYES
LSGILGELQEAIIAAEGSFLERDCTLTGDAINVTSEHFISRGRQNNVAVMIVVTDGVSSD
SVSEAANHARANGITVIAVGVGNKVDIKELDEIADSNQYRFNVSEYESLSGILGELQEAI
IAAEGSFLERMRSL
Nucleotide sequence
Length: 1,359
>Boleac.CG.SB_v3.S5.g10788.01.t
TCAAGCGGGAATAGGGTATATGCTTATACTATGGGCTTCTAGGCCCTAAACTATTCTGTT
ATTTGTATCANAAGGAGCCGGCTAACAGCGTATATCAGTGCGCCCCTGTACAGAAGTCAT
GGAAATGATAGTGAAGTGAACCTGCCTGATGGTGCCATCTATAAATGCTCAATCGATGGG
CATTCTGCTGAAAAAGTTAGCTGCTTCCAAAGATCCTTTGAACCTGGATCGGGCATGGGC
ATGACAATGGCTGAAGTTGGCGAAAATCTTTTGGTGTGTGCTCCGCAGTGGACGTACCAG
TGTAAAAAAGCAAATTTACCCCTTCGTATGGTTGGAAATTGTTATGTATTGAATGCACAA
GGATTCGAATACCGTGAACCAGAAACNTTGGACTCGCCGTATGTTCGAGATTGCCCAGGT
GAATTGGATGTTATATTATTATTGGATGGCTCTGGAAGCATTGGTGNAAGAGATTTCTAC
ATTGCCCTGGCTTGGGTGAAAGATTTTCTGAAAAGTTACAGGGAGGGCTTGAATAACGGT
GAAGTGCATGTGGGATTGATACAATACAGTGGATACACTGAAGAGTCATCTTGTGACATG
GGTAACCTAACAAGAAAATTGAAGGTGGAGATGCCCCTTGGCAGCTATAATTTGTCTGAA
GCCACTGACATTATATCTCGGGTGGTAAGCCTCGGACATTGCACGCTTACTGGTGATGCC
ATAAACGTGACAAGCGAGCACTTCATCAACCGTGGACGACAAAACAATGTAGCTGTTATG
ATCGTGGTGACAGACGGCGTTTCAAGCGATTCAGTTTCAGAAGCAGCGAATCACGCACGA
GCGAACGGGATTACTGTGATTGCAGTCGGAGTTGGTAACAAAGTTGACATTAAGGAACTC
GATGAAATCGCAGATAGCAACCAATACAGATTCAACGTATCCGAGTATGAAAGCTTATCA
GGCATCCTTGGAGAACTTCAAGAAGCTATTATCGCGGCTGAAGGTTCTTTTCTTGAACGA
GATTGCACACTTACTGGTGATGCCATAAACGTGACAAGCGAGCACTTCATCAGCCGTGGA
CGACAAAACAATGTAGCTGTTATGATCGTGGTGACAGATGGCGTTTCAAGCGATTCAGTT
TCAGAAGCAGCGAATCACGCACGAGCGAACGGGATTACTGTGATTGCAGTCGGAGTCGGT
AACAAAGTTGACATTAAGGAACTCGATGAAATCGCAGATAGCAACCAATACAGATTCAAT
GTATCCGAGTATGAAAGCTTATCAGGCATCCTTGGAGAACTTCAAGAAGCTATTATCGCG
GCTGAAGGTTCTTTTCTTGAACGTATGAGATCTCTTTAA
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[35-252] 1.04E-41 - T[260-361] 6.08E-22 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[57-258] 7.2E-40 - T[259-371] 2.5E-22 |
| SMART |
VWF_A (IPR002035) - T[63-253] 1.9E-30 |
| Pfam |
VWF_A (IPR002035) - T[65-244] 1.3E-28 - T[262-352] 9.3E-15 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[65-248] 24.394 - T[265-356] 14.779 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COLA1_HUMAN | 33.333 % | 90.5 | 1.27E-19 |