- Transcript 'Boleac.CG.SB_v3.S25....' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Boleac.CG.SB_v3.S5.g...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S5.g10727.01.t
Possible name(s)
DAW1; POC1A; THOC3
Gene model
Location
S5 [146,391 / 148,220]
Amino acid sequence
Length: 326
>Boleac.CG.SB_v3.S5.g10727.01.p
MEDVLKLQHHFKQNCRQKEYGAHSAKVHSVAWNCDGKKLASGSFDQTANVFSLDKDRLSR
EQSYKGHTDSVDQLCWHPNHPDLFATASGDKTVRTWDSRSGKCIATMQTKGENINICWSP
NGQTIAVGNKEDLVTFFDTKTWKAKAHEQFKVEVNEISWNNSNDLFFLTTGLGTVNILSF
PELKLIQSLTGHTANCICIEFDPSGRYFATGSADALVNLWDVTELVCVRTFSRLDWPVRT
LSFNHNGSLLASASEDHXIDISSXHTGKNVCEVKCESPTFTVAWHPKQNLLAFACDDKEK
YKHDRDAGTVKLFGLPNESSTTTEKK
Nucleotide sequence
Length: 981
>Boleac.CG.SB_v3.S5.g10727.01.t
ATGGAAGACGTCTTAAAACTACAACACCACTTCAAGCAAAACTGTCGTCAAAAAGAGTAC
GGCGCGCATTCGGCAAAAGTCCATTCCGTGGCCTGGAACTGTGATGGCAAGAAGCTTGCT
TCCGGCTCATTTGACCAGACTGCAAATGTTTTCAGCTTGGACAAGGACAGACTGTCTAGA
GAGCAATCATATAAAGGCCACACAGACAGTGTTGATCAGTTATGTTGGCATCCAAACCAT
CCTGACCTTTTTGCAACTGCATCAGGAGACAAGACTGTCAGGACATGGGACTCAAGGAGT
GGAAAGTGTATCGCAACTATGCAGACTAAAGGTGAGAACATAAACATATGTTGGAGTCCC
AATGGCCAAACAATCGCAGTTGGAAACAAAGAAGACTTGGTGACCTTTTTTGATACAAAA
ACATGGAAAGCAAAAGCACATGAACAGTTCAAAGTTGAAGTCAATGAAATATCATGGAAT
AACTCAAATGATCTGTTCTTCCTTACCACTGGACTTGGAACGGTTAACATCCTCAGCTTT
CCAGAACTGAAATTGATTCAGTCATTGACTGGGCATACGGCCAATTGCATATGCATTGAG
TTTGACCCATCAGGAAGGTACTTTGCCACAGGGAGTGCAGATGCCTTGGTAAATTTATGG
GATGTCACAGAACTAGTATGTGTCAGGACATTTTCAAGACTGGATTGGCCAGTACGCACT
TTGAGCTTTAACCACAATGGATCATTGCTAGCTTCAGCATCAGAAGATCACTTNATCGAC
ATATCTAGCNTGCACACCGGAAAAAATGTTTGTGAGGTCAAGTGTGAATCACCAACTTTC
ACTGTTGCATGGCACCCAAAGCAAAATCTACTTGCATTTGCTTGTGATGACAAGGAAAAG
TACAAGCATGATAGGGATGCTGGGACTGTAAAACTATTCGGTTTGCCAAACGAGTCAAGC
ACAACAACAGAGAAAAAATGA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[7-185] 3.3E-34 - T[186-324] 3.8E-27 |
| SMART |
WD40_repeat (IPR001680) - T[13-52] 1.3E-5 - T[57-97] 1.2E-9 - T[100-138] 1.0 - T[182-221] 5.2E-9 - T[224-263] 0.13 - T[266-304] 52.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[15-298] 1.13E-60 |
| Pfam |
WD40_repeat (IPR001680) - T[17-50] 0.0014 - T[62-97] 3.4E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[20-61] 10.408 - T[64-106] 14.786 - T[189-230] 14.753 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[20-272] 27.632 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[39-53] 4.7E-5 - T[84-98] 4.7E-5 - T[208-222] 4.7E-5 |
| Pfam |
TIF_beta_prop-like (IPR013979) - T[102-212] 1.8E-9 |
| Pfam |
Apc4_WD40_dom (IPR024977) - T[234-278] 1.9E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1A_HUMAN | 28.571 % | 86.7 | 5.7E-19 |
| DAW1_HUMAN | 25.786 % | 90.9 | 2.01E-20 |
| THOC3_HUMAN | 71.609 % | 488 | 9.83E-175 |