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TRANSCRIPT CARD

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  1. Transcript 'Boleac.CG.SB_v3.S58....'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S58.g11841.01.t

Possible name(s)

TMED10; TMED4; TMED9

Gene model

Boleac.CG.SB_v3.S58.g11841

Location

S58 [80,590 / 84,243]

Sequences

Amino acid sequence

Length: 204

>Boleac.CG.SB_v3.S58.g11841.01.p
MNTLSVALVLAFATVSSALIFKLPVNTEKCLKEEIHKDVLVKGEYGVTPHAGVTVNLLVT
DSNGHILYNKDDAKDGKFAFTTDDYDMFQVCFKSQSDVRGKMPDQDIELNMKRGVEAKNY
DDIAKTEKLKPLEVELRRLEDLSESIVXAFAYMKTRESEMRDTNESTNSRVLYFSIFSML
CLVGLATWQVLYLRKFFKSKKLIE

Nucleotide sequence

Length: 1,941

>Boleac.CG.SB_v3.S58.g11841.01.t
AGAGTGACCGTCATTATGAATACACTATCAGTAGCATTGGTACTTGCGTTTGCGACGGTG
AGCAGTGCTTTGATCTTCAAACTTCCAGTAAATACGGAGAAATGCTTGAAAGAGGAGATA
CACAAAGATGTCCTTGTCAAAGGAGAGTACGGAGTAACACCACATGCTGGAGTCACAGTT
AACCTTTTGGTCACAGACTCTAACGGCCACATTCTTTATAACAAAGATGATGCTAAAGAT
GGAAAATTTGCTTTCACAACAGATGATTATGACATGTTCCAAGTCTGCTTCAAAAGTCAA
TCGGATGTTCGAGGTAAGATGCCCGATCAAGACATCGAGCTGAACATGAAGCGTGGAGTT
GAGGCAAAAAATTATGATGATATCGCCAAGACAGAAAAGCTGAAACCTTTGGAAGTGGAA
TTGAGAAGACTTGAAGATTTATCTGAATCGATTGTCAGNGCTTTTGCATACATGAAGACA
AGGGAGTCAGAGATGAGAGATACTAACGAATCTACCAACTCCCGAGTGTTGTATTTTAGC
ATTTTCTCAATGCTTTGCCTTGTTGGATTAGCGACATGGCAAGTTCTCTACCTCAGAAAG
TTCTTCAAATCTAAGAAACTAATAGAGTAAAACATGGCGCAACTCGAAATGGAGAGACCT
ATTTATGAAGTCTACGAGAACTCTTATATATCTTAGGTGGATTATACTTTTTGACAAGGA
TTGAAAGCACGTATCGGGGTAGTACTGTTTTGAGATTCGATCAGCCAATATGCACTAGAT
TTCTTTCTGCATTGACAACCTGACTGCAAACTAGCCTGAATGGTACAAACCCAAATTTGG
CACTGACTTTGACATGTTAGATATGAATGGCATCCAGTCCGTGGAAAATAACGGCTCTTA
ATTTCATCAACGGAAGCATGATGAAATCCAAATGATGGATTTTATGTTACCTCTAGTATG
CACTACGTTTGTATTGAGGGACTTGGAGAGACTGCCCCACCCTTGGGACTGCAGCATTAC
TTGGGATTATTGTCTTTGGCAATTTCCTAACCCTGGCATGTTAGGAAATTACGGCAGCAA
CGTGATCAGATTGAGGCTTCACCATCTTCAAGTTTGTCCTCATTCACCATAATATTTTAT
TGATTAGACGTGAAACATGGACTACATGGACCATAGTGCAACNTAATAATTGACTTCTTA
AGCTTCCTACTCTGCGGACCCNCTTGCTGCTCTTCCAGGGTATGCAGCATCATCACCATT
TTGTGTTATCTCGAAGGGCTTGGTAGCTTGTTGTAATTGTGGTGCATTATGTTCGATGCT
TCTTGTGTTTATTATGAATGATTGCCTTCGCAACCAGGCAATACTTCAGTCTTTTCTTGT
ATCACTTTCATGGAATGTTTGCGAATGGATTAAAAAGGAGTTTTAAGACCTGAGTTGCAA
CTGCTCACAAAAATGTGATGGATCACCGATACCACATCGTACCCGTGGCCTCTCATGCTG
CGATATTCCGTGATTCCTGTGCGTCGTCCAACACTTTCACATGAATTATGTCACAAGAAG
TCGTCGCCGAATAAAGTGATGGGCTCTATGCTGTCATGGTTGCTCGTCTTCATTTCGCTC
CTTGCTACTTTTCCTCTTCTGCGGTAGACAGCACGTCGTTCTCTTTGGTTCGTCATTTCA
TCAGATTGGCTTTCCAAAGCATTGCGAAGGTTTAGGTAAAACTTGTCGATTGCGGAGACA
TTGGCAGTCAATTTTTCATGAGACAGTTTAGCGATATACTTCACATAATCCACTGGCACA
AGTGTATCTCCCTGGGAAAAAATTTGTGGTCTGATTAGAAGATGTAAATAAGNGCAATAA
AGGCTCTGAACGCCTTAGTCAGCAGCCTCANGATTTTCCGCAGCACCACCACCATACAGG
AGCCAAACGTTTGGTCCTGAC

InterProScan

PANTHER
TMP21-related (IPR015720) - T[6-203] 1.3E-80
SMART
GOLD_dom (IPR009038) - T[18-198] 1.1E-68
Pfam
GOLD_dom (IPR009038) - T[19-198] 7.0E-51
ProSiteProfiles
GOLD_dom (IPR009038) - T[28-113] 14.629

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TMED9_HUMAN 32.87 % 113 4.5E-31
TMED4_HUMAN 31.1 % 105 4.46E-28
TMEDA_HUMAN 69.11 % 276 1.78E-95