- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C11.102.v2...' >
- Transcript 'Moocci.CG.ELv1_2.S19...' >
- Clone 'cima824063' >
- Transcript 'Boleac.CG.SB_v3.S555...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S555.g11571.01.t
Possible name(s)
RPS4X; RPS4Y1; RPS4Y2
Gene model
Location
S555 [14,858 / 18,296]
Amino acid sequence
Length: 260
>Boleac.CG.SB_v3.S555.g11571.01.p
MARGPKKHLKRLNAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLAIFLRNRLHYALTYDE
VKKILMQRLVKVDGKVRTDVTYPAGFMDVITIEKTGEHFRLIYDAKGRFAIHRITSEEAK
YKLCKVKKLGVAAKGVPYLVTHDARTIRYPHPDIKTNDTCVVDIATGKISRFTKFEIGLL
CMITGGHNIGRIGTIMNREKHPGSFDIIHIKDATGHTFATRLSNVFIIGQVNKPMISLPR
GKGIRLTIAEERDKRLASKQ
Nucleotide sequence
Length: 865
>Boleac.CG.SB_v3.S555.g11571.01.t
TCCATCTTTTCCTTCTCTAGAGGTGCAAGATGGCACGTGGACCGAAGAAGCATCTTAAGC
GGCTAAATGCGCCTAAACATTGGATGTTGGACAAACTGACTGGTGTATTTGCACCACGTC
CGTCCACAGGTCCGCACAAATTGCGAGAATGTTTGCCTTTGGCAATTTTCCTCAGAAATC
GCCTTCATTATGCTTTAACTTATGATGAGGTGAAGAAAATCCTGATGCAGCGTCTGGTGA
AGGTCGATGGCAAAGTCAGGACAGACGTCACATACCCAGCTGGTTTCATGGATGTCATCA
CCATTGAAAAAACTGGAGAACACTTCCGTCTTATCTATGATGCCAAAGGAAGATTTGCCA
TCCACAGGATTACTTCTGAGGAAGCCAAGTACAAATTGTGCAAGGTGAAGAAGTTGGGAG
TTGCAGCAAAGGGAGTCCCATATTTGGTGACGCACGATGCAAGGACTATTCGTTACCCGC
ATCCAGATATCAAGACCAATGATACATGCGTTGTTGATATTGCCACTGGAAAAATTTCAC
GTTTCACCAAGTTCGAAATCGGTCTTTTGTGTATGATCACTGGGGGTCACAACATCGGTC
GTATTGGAACTATCATGAATCGTGAGAAACATCCCGGTTCGTTTGATATTATTCACATCA
AGGATGCTACAGGCCACACATTCGCTACAAGGTTGAGCAATGTGTTCATCATTGGCCAGG
TCAACAAGCCTATGATTTCGCTCCCCAGAGGCAAAGGTATCCGTCTGACTATTGCTGAAG
AGCGAGACAAGCGACTGGCATCAAAACAATAAATGTGATCATGCTGTCGTTTCTAGAATC
TTGAATAAAAGCATGAATAACAATA
| PANTHER |
Ribosomal_S4e (IPR000876) - T[1-260] 3.3E-147 |
| PIRSF |
Ribosomal_S4e (IPR000876) - T[1-241] 2.0E-97 |
| Pfam |
Ribosomal_S4e_N (IPR013843) - T[3-39] 4.0E-22 |
| Hamap |
Ribosomal_S4e (IPR000876) - T[7-238] 35.675 |
| ProSitePatterns |
Ribosomal_S4e_N_CS (IPR018199) - T[8-22] . |
| ProSiteProfiles |
S4_RNA-bd (IPR002942) - T[42-105] 9.912 |
| SMART |
S4_RNA-bd (IPR002942) - T[42-106] 2.0E-5 |
| Pfam |
S4_RNA-bd (IPR002942) - T[43-90] 2.4E-7 |
| CDD |
S4_RNA-bd (IPR002942) - T[44-112] 6.40287E-5 |
| ProDom |
Ribosomal_S4e_central_region (IPR013845) - T[87-181] 8.0E-29 |
| Pfam |
Ribosomal_S4e_central_region (IPR013845) - T[95-169] 2.0E-36 |
| Gene3D |
Ribosomal_S4e_central_sf (IPR038237) - T[122-171] 2.1E-24 |
| Gene3D |
Rib_L2_dom2 (IPR014722) - T[175-245] 1.5E-35 |
| Pfam |
40S_S4_C (IPR032277) - T[212-259] 1.8E-27 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RS4X_HUMAN | 78.846 % | 437 | 2.58E-157 |
| RS4Y1_HUMAN | 77.692 % | 436 | 6.63E-157 |
| RS4Y2_HUMAN | 74.615 % | 420 | 1.4E-150 |