- Transcript 'Moocci.CG.ELv1_2.S49...' >
- Transcript 'Moocci.CG.ELv1_2.S49...' >
- Transcript 'Moocul.CG.ELv1_2.S83...' >
- Transcript 'KH2012:KH.C2.982.v1....' >
- Transcript 'Boleac.CG.SB_v3.S540...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S540.g11392.01.t
Possible name(s)
GAPVD1; RABGEF1; RIN3
Gene model
Location
S540 [68,113 / 69,829]
Amino acid sequence
Length: 571
>Boleac.CG.SB_v3.S540.g11392.01.p
MASVRLGAQGNRRGIHLDQSDLKCKNGCDFYGNPAWQGYCSQCWREINYSRKLRQIQEDH
EFAKKLQEEEHQRVRAAQKNAESAQLPSANTSQTSIPVASPQATVKSEKQNITPRSRTVL
QKIFSPTVENDFVSPERSKTISSEPSVRRKIQRSPVNSKKLGTGHSIKNAPPAVWLNNAH
PTERRQSYESQQASKDFIEFIKALKEPASSDIMKQCKVFMDKLIDNKTLNIDEQSELVQE
FYDVMTHRITTHQVFTKYSSEKDKDRIMDNIEKYLMTKVYRNVFCSEHTDDESQDLAVQK
KIRSLHWITTDMLDAQFKEDDRKVSEAMDNAITAIIEMDSKRAPQDKLSCITRCSKCIFE
ALKCSKDEESVASADDFLPALIYIVLKANPPMLKSNISYVTRFSNPVRLMAGEDAYYFTN
LCCAVEFIESGLNASSLSLTEEDFNDYMSGKPVKKQSTVKENLSEDDIMCPGLELMYKNL
NDLAELDQKMDALFAGAVDLQRDIQLHSQFIQESVDAELIKPSPDMTQVKQELSKEMHEL
TKLHSTWTSGTSALDADNPPDLPPPLEPTHM
Nucleotide sequence
Length: 1,716
>Boleac.CG.SB_v3.S540.g11392.01.t
ATGGCCTCAGTTCGACTTGGTGCACAAGGCAACCGCAGAGGCATCCATCTTGATCAATCA
GATCTCAAGTGTAAAAACGGCTGTGATTTTTATGGAAACCCAGCATGGCAAGGCTATTGT
TCACAATGTTGGCGAGAAATCAATTATTCACGAAAATTACGACAAATACAAGAAGACCAT
GAGTTTGCAAAGAAGCTACAAGAAGAGGAACATCAAAGAGTTCGAGCTGCACAAAAGAAT
GCTGAAAGTGCGCAGTTACCCAGTGCCAATACATCGCAGACCAGCATTCCAGTAGCATCC
CCACAAGCAACTGTCAAGAGTGAGAAACAAAATATTACGCCTCGTTCGAGAACTGTTCTT
CAAAAGATATTTTCTCCTACTGTTGAAAATGACTTTGTTTCTCCAGAAAGATCAAAAACG
ATTTCCAGTGAACCTTCTGTACGGAGAAAAATACAGCGCTCACCGGTCAATAGTAAGAAG
TTGGGAACAGGCCATTCAATTAAGAATGCACCGCCTGCAGTATGGCTTAATAATGCACAT
CCCACCGAAAGACGTCAAAGCTATGAGTCACAGCAGGCATCTAAGGATTTTATCGAATTT
ATAAAAGCTTTAAAAGAACCAGCATCATCCGACATCATGAAACAATGCAAAGTTTTTATG
GACAAATTAATAGATAATAAAACATTAAACATTGATGAACAGTCCGAATTGGTACAAGAA
TTTTATGATGTCATGACGCACCGTATAACTACCCATCAAGTCTTCACTAAATACTCATCA
GAAAAGGACAAAGACCGAATAATGGACAATATTGAAAAGTATTTAATGACAAAAGTCTAT
AGGAATGTATTTTGTAGCGAACATACTGATGATGAGAGTCAAGATCTCGCTGTTCAAAAG
AAAATTCGAAGTTTGCACTGGATCACCACTGATATGCTTGACGCCCAATTTAAAGAAGAC
GATCGCAAAGTGTCNGAAGCGATGGATAATGCCATCACCGCAATTATAGAGATGGATTCT
AAAAGGGCACCACAAGATAAACTCTCTTGCATCACAAGATGTAGTAAATGTATTTTTGAA
GCGCTGAAGTGTTCCAAAGATGAAGAATCTGTTGCGAGTGCAGATGACTTTCTTCCCGCA
TTGATATATATTGTTTTAAAAGCAAACCCACCAATGCTCAAATCAAACATCAGTTATGTT
ACTCGATTCTCCAATCCGGTGCGCCTCATGGCAGGAGAAGATGCATACTATTTTACTAAT
CTGTGTTGTGCTGTAGAGTTCATTGAAAGCGGACTAAACGCATCTAGTTTATCTCTTACA
GAAGAAGATTTCAATGATTACATGAGCGGGAAGCCGGTGAAAAAGCAAAGCACTGTGAAG
GAAAACCTTAGTGAAGATGACATCATGTGCCCAGGTTTGGAGTTGATGTACAAAAATCTA
AATGATCTTGCCGAATTAGATCAGAAGATGGATGCCCTTTTTGCAGGTGCTGTAGATTTA
CAGCGGGATATTCAACTTCATTCGCAATTTATCCAAGAGTCTGTTGATGCAGAACTCATA
AAACCTTCTCCTGACATGACACAAGTCAAACAAGAGCTGTCAAAGGAGATGCATGAGTTA
ACCAAACTCCATAGCACATGGACTAGTGGTACATCTGCATTAGATGCTGACAATCCGCCT
GACTTGCCACCGCCATTAGAGCCAACACATATGTGA
| ProSiteProfiles |
Znf_A20 (IPR002653) - T[18-52] 9.674 |
| SMART |
Znf_A20 (IPR002653) - T[21-45] 8.7E-11 |
| Pfam |
Znf_A20 (IPR002653) - T[22-45] 2.5E-12 |
| SUPERFAMILY |
VPS9_dom_sf (IPR037191) - T[194-449] 6.54E-68 |
| Gene3D |
VPS9_dom_sf (IPR037191) - T[288-460] 2.0E-62 |
| ProSiteProfiles |
VPS9 (IPR003123) - T[292-437] 36.799 |
| SMART |
VPS9 (IPR003123) - T[327-446] 1.5E-22 |
| Pfam |
VPS9 (IPR003123) - T[330-430] 1.7E-25 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GAPD1_HUMAN | 27 % | 85.9 | 2.25E-17 |
| RABX5_HUMAN | 37.438 % | 362 | 5.61E-117 |