- Clone 'cijv010a16' >
- Transcript 'Moocci.CG.ELv1_2.S38...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Molecular Tool 'LiCl' >
- Transcript 'Boleac.CG.SB_v3.S518...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S518.g11055.01.t
Possible name(s)
ITGB1; ITGB2; ITGB7
Gene model
Location
S518 [32,856 / 42,629]
Amino acid sequence
Length: 576
>Boleac.CG.SB_v3.S518.g11055.01.p
NFTLAASNACTNRKAKSCGECMEVAGCGWCEDPSYDKNPNIIVSRCETPENLAETCKSII
NPPSKIKAVVNRNHSSVGQSALGKATQLKPQVVSAQLRPGTPGLIEVSYKQAEDYPVDLY
YLLDLSRSMKDDLDSLRQLGRKLGDTMENITKNFQLGFGSFVDKTVMPFISTVEAKLKNP
CSAAEPCVPAYSFHNDLPLSREIDDFVNKVNKVNYSSNLDSPEGGFDAMMQVVVCKDEIK
WRNESTHLLVYVTDAVFHYAGDGKLGGIVAPNDGKCYLDHTGNYYKANEMDYPSIGHLVE
KISTNHIQPIFAVTSTVYNTYQRLQDLIPKSTVGELTADSSNIIDLIEKAYNDLXGQVVL
DVSIPDGVEVVSRTSHCTSGDQDGLTCEGLKIGDVVNFTLSVKTDTCFTDPKKLKISVYG
YNDVTVVDLTTLCDCQCDNTTTAPVSNCSGWFRIVVQLPSRKIDGTYCECDNTSCDRING
RVCNGKLTRGNCFIATLYYFDHFLEGHGICDCNNCVCDEGWSGTGCECTSDKTLCIDPEN
TGDKIVHCNGAGTCNCGECKCNVTKTGFEVRRVVLC
Nucleotide sequence
Length: 1,731
>Boleac.CG.SB_v3.S518.g11055.01.t
AATTTTACTTTAGCGGCAAGTAATGCATGTACCAACAGGAAGGCCAAGTCTTGTGGGGAA
TGTATGGAAGTAGCTGGTTGTGGTTGGTGTGAAGATCCGTCATACGACAAAAACCCTAAT
ATCATTGTGTCTCGATGTGAAACGCCAGAAAATCTTGCAGAAACATGTAAATCTATTATA
AACCCACCTTCCAAGATCAAAGCTGTTGTTAATCGAAATCATTCATCTGTTGGACAGTCG
GCGTTGGGCAAAGCCACGCAACTGAAACCACAAGTGGTTTCTGCACAACTTAGACCAGGC
ACACCTGGATTGATTGAAGTCTCATACAAGCAAGCTGAAGATTATCCAGTGGATTTATAT
TATTTGCTGGATCTATCAAGGTCAATGAAGGATGATTTGGATTCTTTACGACAGTTGGGA
AGGAAACTGGGTGATACTATGGAAAATATTACTAAAAACTTTCAACTGGGATTCGGATCG
TTTGTGGACAAGACGGTTATGCCTTTCATTTCTACTGTGGAAGCAAAACTCAAGAATCCA
TGCAGTGCAGCTGAACCATGTGTACCAGCGTACAGCTTCCATAATGATCTGCCTCTATCT
CGTGAAATTGATGACTTTGTGAATAAAGTAAACAAAGTCAACTATTCATCCAATCTGGAT
TCTCCTGAAGGAGGCTTTGATGCCATGATGCAGGTTGTTGTTTGCAAAGATGAAATCAAA
TGGCGGAATGAGTCAACCCATTTACTGGTTTATGTCACTGACGCTGTATTTCATTATGCT
GGAGATGGTAAACTTGGAGGTATTGTGGCACCTAATGATGGAAAGTGCTATTTGGACCAC
ACTGGTAACTACTACAAAGCAAATGAGATGGATTATCCGTCAATTGGACATCTTGTGGAA
AAGATAAGCACAAATCACATTCAACCTATCTTTGCAGTTACATCAACTGTATACAACACT
TATCAGAGATTGCAAGATTTGATACCAAAGTCAACTGTTGGAGAATTGACCGCNGATTCT
TCNAACATTATCGATCTAATCGAAAAAGCTTACAATGATTTGNTGGGACAGGTCGTTCTT
GATGTGAGCATTCCTGATGGAGTTGAAGTAGTGAGTCGAACAAGTCACTGTACTTCTGGA
GATCAGGATGGATTAACNTGTGAAGGATTGAAGATTGGAGATGTGGTTAATTTCACTCTC
AGTGTCAAAACGGATACGTGCTTTACTGACCCAAAAAAGTTGAAAATCTCAGTTTATGGA
TACAATGACGTGACAGTTGTTGACCTGACAACTCTTTGTGACTGTCAATGTGATAACACG
ACAACTGCTCCTGTGTCAAATTGCTCAGGTTGGTTTCGTATTGTTGTCCAATTGCCCTCT
AGGAAGATTGATGGAACATACTGTGAATGTGACAACACTTCATGTGACCGTATAAATGGG
AGAGTTTGTAATGGTAAGTTAACGAGAGGCAATTGTTTCATTGCCACATTATACTATTTC
GATCATTTTCTTGAAGGTCATGGAATATGTGACTGCAACAATTGTGTTTGTGATGAGGGC
TGGTCTGGCACTGGTTGTGAATGTACATCTGATAAGACTCTATGCATCGATCCAGAGAAC
ACAGGTGACAAAATTGTACACTGCAATGGAGCAGGAACTTGCAATTGTGGTGAATGTAAA
TGCAATGTAACCAAAACTGGTTTTGAGGTAAGACGTGTTGTGTTATGTTGA
| PANTHER |
Integrin_bsu (IPR015812) - T[6-450] 1.1E-165 - T[459-564] 1.1E-165 |
| SMART |
Integrin_bsu_VWA (IPR002369) - T[17-435] 6.3E-186 |
| PRINTS |
Integrin_bsu (IPR015812) - T[87-100] 2.9E-79 - T[115-133] 2.9E-79 - T[155-174] 2.9E-79 - T[187-206] 2.9E-79 - T[220-242] 2.9E-79 - T[247-262] 2.9E-79 - T[291-314] 2.9E-79 - T[327-351] 2.9E-79 - T[548-561] 2.9E-79 |
| Pfam |
Integrin_bsu_VWA (IPR002369) - T[112-356] 1.4E-108 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[112-354] 1.31E-79 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[112-358] 1.8E-139 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[371-439] 6.8E-15 |
| ProSitePatterns |
Integrin_bsu (IPR015812) - T[548-561] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITB7_HUMAN | 37.869 % | 389 | 4.67E-126 |
| ITB2_HUMAN | 37.105 % | 367 | 5.31E-118 |
| ITB1_HUMAN | 38.213 % | 399 | 5.51E-130 |