- Molecular Tool 'Prdm1-r.b mRNA (Ikeda 2017)' >
- Transcript 'Cisavi.CG.ENS81.R2.3...' >
- Transcript 'Cisavi.CG.ENS81.R2.3...' >
- Transcript 'Moocci.CG.ELv1_2.S64...' >
- Transcript 'Boleac.CG.SB_v3.S4.g...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S4.g09098.01.t
Possible name(s)
ISL1; ISL2; LHX5
Gene model
Location
S4 [575,485 / 590,662]
Amino acid sequence
Length: 412
>Boleac.CG.SB_v3.S4.g09098.01.p
MMSSGWITLVENVTNPLRNANLNRPPRCAGCGGPIQDQYILKVAPNLEWHAGCLKCTDCG
QHLDETGRCFVRNGKTYCKQDYILHFGTKCNRCGLGFTSTDLVMRAXNKIYHTDCFRCRA
CDRQLVSGDEFALNEDGLYCIADHVERSVMHNEMLGLQHQGDPTMNPVLSPMGLPNGSVL
SPVMPGVVPPGHLGNGGSVGGSSSQSNVSASGRRSHKDPKTTRVRTVLNEKQLHTLRTCY
AANPRPDALMKEQLVEMTGLTPRVIRVWFQNKRCKDKKRAIAMKQMQDQHQNPHQHQDGD
QVMPNGGGHGLHGLHGVPMVATEPVRNDNSMNAKPVEVRNYQQPAWKALSDFALGAEIEQ
PAFQQLVNFSDQGQGSLSDSSDISSIPSVSSALTSCSTPMTTPQDINVSVCS
Nucleotide sequence
Length: 1,960
>Boleac.CG.SB_v3.S4.g09098.01.t
ATGATGTCAAGTGGTTGGATAACCCTTGTCGAAAATGTCACAAACCCGTTACGAAACGCA
AATCTCAACAGGCCACCGCGTTGTGCTGGATGTGGAGGTCCGATTCAAGACCAGTACATA
TTGAAAGTTGCGCCTAACTTGGAATGGCACGCTGGCTGCTTGAAATGCACAGATTGCGGT
CAACACCTTGACGAAACGGGAAGATGTTTTGTCAGAAACGGGAAAACATACTGCAAGCAA
GACTATATTTTGCATTTCGGCACCAAATGTAACAGATGCGGTTTGGGCTTCACAAGTACA
GACCTTGTCATGCGGGCANGGAACAAAATTTACCATACGGACTGCTTCAGGTGTAGAGCA
TGCGACCGACAGTTAGTCTCGGGCGATGAATTCGCTCTAAATGAAGACGGACTTTATTGC
ATCGCAGATCACGTAGAAAGATCAGTGATGCATAACGAAATGTTAGGTCTTCAACATCAA
GGAGATCCAACTATGAATCCAGTGCTTTCACCAATGGGTTTACCAAACGGTTCTGTGTTG
AGTCCTGTGATGCCAGGCGTCGTACCTCCAGGACATTTAGGAAACGGAGGTAGCGTTGGA
GGTAGTTCTTCCCAATCAAACGTATCTGCAAGTGGGAGAAGGTCGCATAAAGATCCGAAG
ACAACACGAGTCCGAACTGTATTGAACGAAAAACAACTTCACACGCTCCGTACCTGCTAT
GCAGCTAATCCCCGTCCCGATGCTTTAATGAAAGAACAACTAGTCGAAATGACTGGACTT
ACGCCGAGAGTGATCAGAGTTTGGTTTCAAAACAAGAGATGTAAAGACAAGAAGCGAGCN
ATCGCAATGAAACAAATGCAGGACCAACATCAGAATCCACACCAACATCAAGATGGTGAC
CAGGTCATGCCTAATGGGGGCGGTCACGGCCTACATGGTCTTCACGGTGTTCCTATGGTT
GCGACCGAGCCGGTACGGAACGACAATTCAATGAACGCAAAACCTGTTGAAGTCAGAAAT
TACCAACAACCCGCGTGGAAAGCTCTCAGCGATTTTGCTTTAGGAGCCGAAATTGAACAG
CCTGCATTTCAGCAATTGGTGAATTTTTCAGACCAAGGACAAGGTTCCTTGTCAGACTCA
TCTGACATAAGCAGTATTCCATCCGTTTCGTCAGCGCTGACGTCATGTTCAACACCAATG
ACGACACCACAAGATATCAACGTCTCAGTATGCAGTTAAGATAACAACATGTCCAACCCA
CGTGATACAAGACTGTATATGGCACGCAATCCGAATGCGTTGATACACAACCGCCAAGTA
AACTCGCCGCGCGTTGGAACGGGAATAAACACAAATAAATGAAGNCTACATGATGGACTG
AAAAGGTGGCGAAGCAGTAATTTCTACCCGTTTCCGTATGTTAGATATGCCGTTTTAGCA
AATTTTATTATTTATCGATTCTACCATTATATATAGATAGCCATTCATCAAACGATAAGT
TTTTGCCGATCAATTCTGCTATCAGAACAAATATCCAGAAAAAAATCCCAGAGGTTTTGT
ATATAGGTCCGGGCTGATTTGAATAAGTCCTGCCTGTAATAGTTTCCTACAACAAATGAT
CGCAACCCAAAAGGTTTCTATGTATACATATATATTATATAATATTCTGAAATGGCTAAG
TACGCAGATATATCACGCGAAATGTCGCGGTCTCAACTGCTGTGTCTGGNGTCTGTTTAG
TTTATTGCCGATATTTCCACCAATCTTATCACCGTTCTCTATTTTTTATTATATCATCTC
TTTACGTCTGTTGCTTTCTATTTAACCCATCTCCTTACTTTTGTCTTTATATTTTCTGTT
GATTAGTTTCCATGTTAATCATCAATCGATAAACTGAATGCCCAGTTTTGCATCATTTTA
TCAACAAAAGCTATACAGAAATAAAGCAGTTCACTCTGTA
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[26-88] 14.375 - T[89-150] 10.781 |
| SMART |
Znf_LIM (IPR001781) - T[27-81] 1.0E-15 - T[89-143] 1.5E-14 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[28-63] . - T[90-125] . |
| Pfam |
Znf_LIM (IPR001781) - T[28-83] 1.8E-15 - T[90-147] 8.4E-14 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[205-279] 2.78E-18 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[219-279] 16.001 |
| SMART |
Homeobox_dom (IPR001356) - T[221-283] 4.4E-20 |
| Pfam |
Homeobox_dom (IPR001356) - T[223-278] 6.9E-15 |
| CDD |
Homeobox_dom (IPR001356) - T[223-279] 1.74827E-17 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[254-277] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX5_HUMAN | 34.733 % | 162 | 1.22E-45 |
| ISL1_HUMAN | 55.249 % | 387 | 1.08E-133 |
| ISL2_HUMAN | 53.425 % | 363 | 3.07E-124 |