- Transcript 'Boleac.CG.SB_v3.S443...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S443.g09849.01.t
Possible name(s)
HOXA10; HOXC10; HOXD10
Gene model
Location
S443 [8,413 / 11,363]
Amino acid sequence
Length: 445
>Boleac.CG.SB_v3.S443.g09849.01.p
ACRLXVNRMPGGVFPVDSHYALRANSGYSQATGKDGEITSTNHMTQGNLPRSNLSAVGMH
HGNSDVARNQHALPLPDYQTGFGHRMIKDRPPISIADYQQFDNTTSLGVGITAPHIFDGV
NIEQNSSGSPSNKNFSYATLTTKPIKSNGQYGQQISGDISQVRSPGEVPCYPQQVKAEFL
AAEVFSPSRSPTSDTSSSDRRLMTSSSVDSMSAEKSPTKNSSLDYDGDSSYQDDCSKGEK
KSGDEDPTKHWLTANGRKKRVPYTKYQLLELEKEFHYNQYLSRERRQEVAKAVNLTDRQV
KIWFQNRRMKWKKEKKEEKVRDGITIPPPPHLLHPHNHGNPMHQAHFSSLSHYSGTAAAL
AAAASMSHHHPSAGGIGAHHGHFNGSIGHNGPASHFQHPSYSAGHSGMPGPMTAVAAADF
FSFHHHGYQVPRDPSAGLQLGCMYN
Nucleotide sequence
Length: 1,338
>Boleac.CG.SB_v3.S443.g09849.01.t
GCCTGTCGGTTGNATGTGAACAGAATGCCNGGTGGAGTATTTCCTGTGGATTCTCACTAC
GCACTTCGCGCTAATTCTGGCTACAGTCAAGCAACAGGCAAAGACGGAGAGATCACATCG
ACCAATCATATGACTCAAGGCAACTTACCACGAAGTAATCTATCTGCTGTGGGAATGCAT
CACGGAAACAGTGATGTTGCCAGAAATCAACATGCGCTCCCACTACCTGATTATCAAACA
GGTTTTGGGCATCGAATGATTAAAGACCGACCACCGATATCAATAGCAGACTATCAGCAA
TTCGACAACACAACATCATTAGGAGTTGGNATCACNGCCCCTCATATATTCGACGGTGTC
AACATTGAACAGAACTCATCCGGCTCGCCTTCAAATAAGAACTTCTCATACGCGACTTTG
ACAACGAAACCTATCAAATCAAACGGTCAGTATGGCCAACAAATTTCAGGTGATATATCA
CAGGTCCGTTCACCGGGCGAAGTCCCATGCTATCCGCAACAAGTAAAAGCTGAATTCCTC
GCGGCAGAAGTATTTTCTCCGTCGCGTTCCCCAACATCTGACACTTCAAGTAGTGATCGC
CGATTGATGACGTCATCATCGGTAGATTCTATGTCTGCTGAAAAATCACCGACAAAGAAC
TCCTCGTTGGATTACGATGGAGATTCGTCGTATCAAGACGACTGCAGTAAAGGCGAAAAG
AAATCTGGAGATGAAGATCCAACCAAACATTGGTTGACAGCAAACGGTCGGAAAAAGCGT
GTTCCATACACAAAGTATCAATTGTTGGAATTGGAGAAAGAATTCCATTACAACCAATAT
CTCTCACGCGAACGTCGACAAGAAGTGGCAAAAGCAGTTAACCTAACAGATAGACAAGTC
AAGATTTGGTTTCAAAACAGACGAATGAAATGGAAAAAAGAGAAAAAGGAGGAAAAGGTG
CGAGATGGAATCACTATTCCACCTCCTCCTCATCTTCTACATCCTCACAATCACGGAAAC
CCAATGCATCAAGCTCATTTCTCTTCGCTAAGTCATTACTCGGGAACTGCCGCCGCATTA
GCAGCAGCCGCTAGTATGTCTCATCATCATCCATCTGCCGGAGGTATCGGTGCACACCAC
GGTCATTTCAATGGATCAATAGGACATAACGGCCCTGCATCTCACTTTCAACATCCATCC
TATTCCGCAGGACATTCAGGTATGCCTGGACCAATGACAGCCGTNGCAGCGGCAGATTTT
TTCTCATTCCACCACCACGGGTATCAGGTGCCTCGGGACCCTTCTGCAGGATTGCAACTT
GGTTGCATGTATAACTAG
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[249-316] 4.28E-26 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[254-314] 21.994 |
| SMART |
Homeobox_dom (IPR001356) - T[256-318] 3.3E-28 |
| Pfam |
Homeobox_dom (IPR001356) - T[257-313] 3.5E-22 |
| CDD |
Homeobox_dom (IPR001356) - T[257-309] 4.53545E-24 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[278-289] 1.4E-7 - T[293-303] 1.4E-7 - T[303-312] 1.4E-7 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[289-312] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXD10_HUMAN | 65.217 % | 124 | 4.85E-32 |
| HXC10_HUMAN | 59.184 % | 119 | 2.72E-30 |
| HXA10_HUMAN | 67.568 % | 115 | 1.69E-28 |
