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TRANSCRIPT CARD

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  1. Clone 'AHC0AAA256YG05' > 
  2. Transcript 'KH2012:KH.L34.6.v1.C...' > 
  3. Clone 'cien47858' > 
  4. Transcript 'KH2012:KH.C7.514.v1....' > 
  5. Transcript 'Boleac.CG.SB_v3.S421...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S421.g09518.01.t

Possible name(s)

BCL2L2-PABPN1; PABPN1; PABPN1L

Gene model

Boleac.CG.SB_v3.S421.g09518

Location

S421 [82,087 / 82,792]

Sequences

Amino acid sequence

Length: 234

>Boleac.CG.SB_v3.S421.g09518.01.p
MSDIHDVDDSLDGLNSHDGDSLAVDNSALLEESPTDTTQNDTVDSLVEDPELEAIKARVK
EMEAEAEKLKEMQNEVEKQINLSPTSPHLPGGTATFPSLEEKVEADTRSIYVGNVDYSAT
AEELEQHFHGCGSVNRITILCDKFTGHPKGFAYVEFTDKESVETSLALDGSLFRGRQIKV
NPKRTNKPHFHFSERPRPRGRGRFRGRGHHGYPSYTRGRRAYRGRSRAMYYSPY

Nucleotide sequence

Length: 705

>Boleac.CG.SB_v3.S421.g09518.01.t
ATGTCTGATATACATGATGTCGATGACAGTCTTGATGGACTTAACTCTCACGATGGAGAC
TCCTTAGCCGTTGATAATTCAGCTCTCTTGGAAGAATCTCCCACGGATACAACACAGAAT
GACACAGTNGACAGCCTTGTTGAAGATCCCGAATTGGAAGCAATCAAAGCAAGGGTCAAA
GAAATGGAAGCTGAAGCTGAGAAGCTGAAAGAGATGCAAAATGAAGTTGAAAAACAAATA
AATCTGAGCCCAACCTCACCTCATTTGCCAGGTGGCACTGCTACTTTCCCGTCACTCGAG
GAAAAAGTAGAAGCTGACACAAGGTCGATTTATGTTGGCAATGTTGATTATAGTGCTACA
GCAGAAGAGTTGGAGCAACACTTCCATGGGTGTGGTTCGGTGAATAGGATAACAATTTTG
TGCGACAAGTTCACGGGNCATCCAAAAGGATTTGCTTATGTTGAATTTACAGATAAAGAA
TCNGTGGAGACCTCACTTGCTTTGGATGGCTCATTATTTAGGGGAAGACAAATTAAAGTG
AACCCGAAACGTACCAATAAGCCTCATTTTCATTTCTCAGAAAGACCTAGACCGCGGGGT
CGTGGCCGGTTTAGAGGACGTGGACATCATGGCTATCCAAGTTATACGAGAGGTCGCCGA
GCTTATCGTGGGCGGTCTAGAGCAATGTACTATTCACCCTATTAA

InterProScan

PANTHER
PABP2 (IPR034911) - T[24-234] 7.4E-93
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[99-222] 5.0E-27
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[101-213] 5.85E-31
ProSiteProfiles
RRM_dom (IPR000504) - T[108-185] 17.762
SMART
RRM_dom (IPR000504) - T[109-181] 2.5E-21
Pfam
RRM_dom (IPR000504) - T[110-179] 7.6E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PABP2_HUMAN 65.865 % 233 1.26E-76
EPAB2_HUMAN 46.445 % 153 1.13E-45