- Clone 'cinc030c16' >
- Region 'REG00000563' >
- Transcript 'KH2012:KH.C10.493.v1...' >
- Transcript 'KH2012:KH.C13.118.v2...' >
- Transcript 'Boleac.CG.SB_v3.S41....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S41.g09305.01.t
Possible name(s)
DDX10; DDX18; DDX31
Gene model
Location
S41 [145,754 / 148,218]
Amino acid sequence
Length: 796
>Boleac.CG.SB_v3.S41.g09305.01.p
MGEVNAXVSLNLSYDAVPKKKKGKGRFYGNLNYRNPNRAKYLRKKPPHRNRQSCRVLSTS
SVQRKSFTTLSKAEAAASDGNDTSGSTALHFNAFDSLPMASKNRRVNTKVSVKSLRPTKS
KENSKNDQSKAVVTTQPTSKQPAGPWKSSLFNQNPEIPKINQVEVSKVSEEIFTKKEFSD
LSLHPHLVSCVXEKLGLTKMTAIQQESIPVLLQQKDAFIKSQTGSGKTLAYALPIVHMLQ
DKQPKISRTDGPVALILTPTRELALQSYEIFVSLTKPFCHIVPSWIIGGENRKSEKSRIR
KGVNIVVGTPGRILDHIQTTKNFSLQNLHHLIFDEADRLLDMGFQTQIDMILKELKSTSK
QKYQTILLSATLSDKVECLASVTLESPEKIQXANTTCEDSMQEEAESIFAQPENLKQHVC
VVPSKLRLVCLVTFMKAKLARNINTKMVVFLSCRDSVEFHNQLFQRILRHPKTDIGLNVP
SDFELADVDLXEVPISELHGGMSQAERQAVFQKFSTSESGVLLTTDVAARGLDLPSVAWV
IQYTCPGSPVDYIHRVGRTARAGKSGNAILMLTPAEVKYVKLLTQYNIKVNEMNVEDXLT
ASKAVSKKGKCNPALWQKVVEQSKSEATALQNKIEFIIAKNVKIKTLARTAFMSFIRAYA
SYSSASKSIFHVKNLHLGHVAKSFGLQDAPSDIVKRLAKSVSHLPTKSSFEYRQGKMASA
TSNXQNIVQKDEGPPQSSKDSTQPPADEKADETAWKSQRPRLXRKEXMKRKMQLKPDLMS
EFSSGMSLPSKRTKRE
Nucleotide sequence
Length: 2,391
>Boleac.CG.SB_v3.S41.g09305.01.t
ATGGGCGAGGTAAACGCTGNAGTAAGCTTGAATCTTTCATACGATGCTGTTCCAAAGAAA
AAGAAGGGAAAAGGTCGTTTTTATGGCAATTTGAATTACAGAAATCCGAACCGAGCGAAA
TACTTGAGGAAGAAACCGCCCCACCGTAACAGGCAATCCTGCCGTGTATTGAGTACTTCG
TCAGTTCAACGGAAATCATTCACGACACTGTCTAAGGCAGAGGCAGCAGCTTCTGATGGT
AATGATACTTCTGGAAGCACTGCGTTGCATTTCAATGCATTTGATTCTCTGCCGATGGCA
TCCAAGAATAGAAGAGTGAACACCAAAGTTTCAGTGAAATCGCTTCGACCCACAAAATCT
AAAGAGAATTCAAAAAACGATCAGTCGAAAGCAGTAGTTACCACTCAACCTACATCAAAA
CAACCCGCAGGACCTTGGAAGTCGTCACTGTTTAATCAAAATCCAGAAATCCCCAAAATT
AATCAAGTCGAGGTCTCCAAAGTTAGTGAAGAAATCTTCACCAAGAAGGAGTTTTCAGAT
CTGAGCTTACACCCTCATCTTGTGTCCTGTGTGTNTGAAAAACTGGGTCTGACGAAAATG
ACAGCCATCCAGCAAGAGAGTATCCCTGTACTTCTGCAGCAGAAAGATGCATTTATAAAA
TCCCAAACCGGATCAGGAAAGACTCTCGCATATGCATTGCCCATTGTACACATGCTACAA
GACAAACAACCCAAAATTTCAAGGACCGATGGCCCAGTTGCTCTCATTCTCACTCCAACA
AGAGAACTTGCTTTACAGTCATATGAAATTTTTGTTTCGCTAACTAAACCATTTTGCCAC
ATTGTTCCGTCGTGGATTATTGGTGGTGAAAACCGCAAATCAGAGAAATCCAGAATACGT
AAAGGGGTTAATATTGTGGTGGGGACACCTGGACGTATTCTTGATCACATCCAAACAACA
AAAAACTTTTCATTGCAAAATCTGCACCACTTGATATTTGATGAAGCAGATAGACTGTTA
GACATGGGGTTTCAAACACAGATTGACATGATATTGAAGGAATTGAAGTCTACCTCTAAG
CAAAAATATCAAACAATTTTGCTATCAGCAACTCTTTCAGACAAAGTAGAATGTCTTGCA
TCTGTGACGCTTGAAAGCCCTGAAAAAATTCAANTTGCAAACACTACATGTGAGGATTCA
ATGCAAGAAGAAGCTGAGTCCATTTTTGCTCAACCTGAAAATTTAAAGCAGCATGTTTGT
GTTGTTCCCAGCAAATTAAGGCTCGTCTGTCTGGTAACATTTATGAAGGCCAAGTTGGCC
CGCAACATCAACACCAAAATGGTAGTCTTCCTGTCCTGTCGTGATTCCGTTGAGTTTCAC
AATCAGTTATTCCAGCGTATACTCCGACATCCTAAAACTGATATAGGGTTAAATGTCCCC
AGTGACTTTGAACTTGCCGACGTCGATTTANAAGAAGTGCCTATATCTGAACTCCATGGT
GGAATGTCACAAGCAGAGCGTCAAGCAGTATTTCAGAAGTTTTCTACCTCTGAGTCTGGA
GTCCTATTGACAACTGATGTGGCTGCACGAGGGCTAGATCTCCCTAGTGTTGCTTGGGTC
ATACAGTACACATGTCCTGGATCTCCTGTAGATTATATTCATCGCGTTGGAAGGACAGCC
AGAGCTGGAAAGTCTGGGAACGCAATATTGATGTTGACACCGGCTGAAGTGAAGTATGTC
AAGCTTCTCACACAATATAACATTAAAGTTAATGAGATGAATGTAGAAGATATNCTGACC
GCGAGCAAAGCCGTGAGCAAAAAAGGAAAATGCAACCCAGCACTTTGGCAAAAAGTAGTT
GAGCAGTCGAAGAGTGAAGCTACTGCATTACAAAACAAGATTGAGTTTATCATTGCAAAA
AATGTGAAGATAAAAACCCTTGCACGTACTGCATTCATGTCTTTCATTCGTGCATATGCA
TCATACTCATCTGCATCAAAGTCAATTTTCCATGTGAAAAATCTTCACTTGGGTCATGTG
GCTAAGAGTTTTGGCTTACAAGATGCCCCTTCAGATATTGTTAAGAGACTTGCAAAATCT
GTATCTCACCTCCCAACCAAAAGTTCATTTGAATACCGGCAAGGAAAGATGGCATCTGCA
ACTTCAAATGANCAAAACATAGTTCAAAAGGATGAGGGGCCACCACAATCGTCCAAGGAT
AGCACACAGCCTCCAGCTGATGAGAAAGCAGATGAGACTGCTTGGAAAAGTCAACGACCT
CGTCTAAGNCGGAAGGAAATNATGAAGAGGAAGATGCAACTAAAGCCTGACCTGATGTCT
GAATTTAGCAGTGGTATGTCATTGCCATCCAAACGGACTAAAAGAGAGTAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[176-205] 9.721 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[196-403] 3.0E-46 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[201-377] 7.7E-49 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[208-390] 32.087 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[250-583] 9.29E-62 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[332-340] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[414-606] 19.522 |
| CDD |
Helicase_C (IPR001650) - T[414-571] 6.2838E-31 |
| Pfam |
Helicase_C (IPR001650) - T[440-563] 5.0E-22 |
| SMART |
Helicase_C (IPR001650) - T[483-563] 5.6E-27 |
| SMART |
DUF4217 (IPR025313) - T[629-694] 8.4E-26 |
| Pfam |
DUF4217 (IPR025313) - T[631-691] 2.0E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX10_HUMAN | 32.558 % | 255 | 5.81E-73 |
| DDX18_HUMAN | 35.872 % | 296 | 6.3E-90 |
| DDX31_HUMAN | 47.247 % | 508 | 9.49E-169 |