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TRANSCRIPT CARD

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  1. Transcript 'Boleac.CG.SB_v3.S408...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S408.g09275.01.t

Possible name(s)

CRX; OTX1; OTX2

Gene model

Boleac.CG.SB_v3.S408.g09275

Location

S408 [26,056 / 31,951]

Sequences

Amino acid sequence

Length: 351

>Boleac.CG.SB_v3.S408.g09275.01.p
MSYMKSPHYAMNGLGIGPDMNLIHPGVTYSDSAACYFQRLQVHQGHKNMPFGAPPVYGGS
RKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVAVKINLPESRVQKKTPPTTPTALS
ESEQSSNNPASVSPSFPTQPQIKSSPSRVESPSDALKHLAIQEQTSSLQSQVSAQSSAXS
STGSVNIWSPAPISPGANSDSTGGHGGSMSSLSGIPSAANSSLVPYXSNTHSSYGLPSNT
QVSPGGYSQAYGPQSYFGAMDASYLPSMQFPSAASHGVSAAAMASHHHANLHHASHGSHH
GGSQVTSPHAQFMSQSAYSYPHHGHGGLNGYSNPNDCNDYKDQSNPWKFQV

Nucleotide sequence

Length: 1,210

>Boleac.CG.SB_v3.S408.g09275.01.t
TTTTTTCAGGTACAATCCAGGCATAATAATACTTTATTAGTAATCGTATCCTAAAAAGAN
NGATTACGAGGGAATAAAAATCAATCGGAAACATATAAAGTCGACTTCACTCCCTGCTCA
TATCTTGTAGATTGGATATTATTAAATTGGCGCCGAAATGTCCTACATGAAGTCTCCGCA
CTATGCGATGAACGGTCTTGGAATCGGACCTGACATGAATTTAATTCATCCGGGAGTTAC
CTACTCAGATTCGGCGGCTTGTTATTTTCAAAGACTTCAAGTTCATCAAGGACATAAAAA
TATGCCGTTTGGAGCTCCGCCAGTGTATGGTGGCTCAAGAAAACAGCGAAGAGAACGTAC
AACATTCACACGGGCGCAACTTGACGTTTTAGAAGCACTTTTTGCAAAAACAAGATATCC
AGATATCTTTATGAGGGAAGAAGTCGCAGTTAAGATCAACCTACCAGAATCTAGAGTACA
GAAGAAGACGCCGCCAACTACCCCAACCGCATTGAGCGAGTCGGAACAGTCTTCAAACAA
TCCTGCAAGCGTCAGCCCTTCTTTTCCAACACAACCACAAATTAAGAGTTCACCTTCTCG
TGTCGAATCACCATCCGATGCGTTGAAACATCTCGCTATTCAAGAACAGACGTCGTCTTT
GCAGTCTCAAGTGTCGGCACAAAGCAGCGCGCNTAGCAGTACCGGCAGCGTCAACATATG
GAGCCCTGCTCCTATTTCACCCGGAGCAAACAGTGATAGTACTGGAGGACATGGTGGATC
GATGTCCTCATTGAGTGGAATACCTTCAGCCGCTAATTCCTCATTGGTGCCTTACGNCAG
TAATACCCATTCGTCATACGGCCTNCCTTCAAATACTCAAGTTTCTCCAGGTGGTTATTC
GCAGGCTTACGGGCCTCAGTCTTATTTCGGTGCTATGGATGCCTCCTACCTTCCTTCCAT
GCAGTTTCCGTCCGCTGCAAGTCATGGTGTCAGCGCAGCGGCNATGGCTTCTCACCATCA
CGCAAATCTACACCATGCATCGCATGGTAGTCATCACGGAGGATCACAAGTGACGTCACC
ACATGCGCAGTTCATGTCGCAAAGCGCATACTCGTATCCACATCATGGACATGGCGGTCT
GAATGGATACTCAAACCCGAACGACTGCAACGACTACAAAGACCAATCCAACCCGTGGAA
ATTTCAAGTT

InterProScan

SUPERFAMILY
Homeobox-like_sf (IPR009057) - T[49-108] 5.13E-14
ProSiteProfiles
Homeobox_dom (IPR001356) - T[61-108] 11.159
SMART
Homeobox_dom (IPR001356) - T[63-115] 1.2E-7
Pfam
Homeobox_dom (IPR001356) - T[64-108] 1.0E-12
CDD
Homeobox_dom (IPR001356) - T[64-109] 2.4424E-14

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
OTX2_HUMAN 37.741 % 149 1.82E-42
OTX1_HUMAN 59.633 % 127 9.85E-34
CRX_HUMAN 31.111 % 107 9.44E-27