- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Boleac.CG.SB_v3.S39....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S39.g08876.01.t
Possible name(s)
SQSTM1
Gene model
Location
S39 [302,627 / 306,621]
Amino acid sequence
Length: 336
>Boleac.CG.SB_v3.S39.g08876.01.p
MSLQYKAYLIKPKGSVKEIRRFTVDQDVTSSHDYLKNKVASVFPSIGNMFTLHYKDVEGD
FISFSSDEELMQALTQVTDGLFRLYVRIKKDDGKDESEEFGKRWKKFGAFGAFGSHYPHE
PPRHQPHNIHVPPPPHHQWFQGYAPPQSWGFGPWGHPGQPNQTQSQSQGPAKMAEEYLNS
VGEAVAGLLKPLGIDVDVDVEHHGERTKCAESEIKKKQREDAEKEKEKTSDETPPKTTES
TDPTPNQSQTAPTAPPRDGDWTVVSDDEDEPSTPETMNVDIPADANPRLAAALRQMFAMG
FSDEGGWLSRLLETHDYDIARALDTMQPNAQGGMRA
Nucleotide sequence
Length: 1,672
>Boleac.CG.SB_v3.S39.g08876.01.t
TTATTCTCAGACAGACAAGTGTTGAAATATTGTTAAAACAGTCATGTCACTGCAGTACAA
AGCCTACCTTATCAAGCCCAAAGGCAGCGTGAAAGAAATTCGTCGATTCACTGTAGACCA
AGACGTCACGTCAAGCCATGACTATTTGAAGAACAAGGTGGCATCAGTATTTCCAAGTAT
TGGAAACATGTTCACCTTACATTACAAAGACGTGGAAGGCGACTTCATCTCTTTCAGCTC
TGATGAAGAATTGATGCAAGCGTTGACCCAGGTCACTGATGGTCTGTTCCGGTTGTATGT
CAGAATCAAGAAAGATGATGGAAAAGATGAGAGTGAGGAGTTCGGGAAGAGATGGAAGAA
ATTTGGTGCTTTCGGTGCCTTTGGCAGCCATTACCCTCACGAGCCACCACGTCATCAACC
TCACAACATCCACGTTCCTCCTCCTCCCCATCATCAATGGTTTCAAGGATATGCTCCTCC
TCAATCTTGGGGCTTTGGACCTTGGGGACACCCTGGCCAGCCAAACCAAACTCAGAGCCA
ATCACAAGGCCCTGCAAAAATGGCGGAAGAATACTTGAACAGTGTTGGTGAGGCAGTCGC
TGGTTTGTTGAAACCGCTTGGAATCGATGTTGATGTTGACGTTGAGCATCACGGAGAGAG
AACCAAGTGCGCAGAGAGTGAGATAAAAAAGAAACAAAGAGAAGATGCGGAAAAAGAAAA
AGAGAAAACTTCTGATGAGACCCCTCCAAAAACAACAGAAAGCACAGATCCAACTCCCAA
CCAAAGCCAAACTGCACCAACAGCGCCACCACGTGACGGAGATTGGACTGTTGTTTCCGA
CGATGAAGATGAACCAAGCACTCCCGAGACCATGAACGTCGATATCCCGGCCGATGCAAA
CCCTCGTCTCGCTGCCGCTTTGAGACAAATGTTTGCGATGGGATTCAGTGACGAAGGGGG
ATGGCTTTCCCGTTTGTTGGAGACACACGACTACGACATCGCTCGCGCGCTCGATACCAT
GCAACCGAACGCGCAAGGGGGGATGAGAGCATAAAGCTCTGCTACCATCTAGCGGATGCT
CTTTTGTATTATATCTTCAGCTTTTAAAATCATGATTTGTATCTATAATCATTAATCGGC
CATGGGTTTTATTCCAGATATCTTTCTCTTGTCAATGGCCTATCTTCAAAAACGCACTCT
GGCTGAGTCTGAGTTACGGTCCGATGCACCAAATGGTTAACTGCGTCTTCNCTAACCCGT
NTTCAATCAAATCTNAACAGTGAACACTGTTCGTANGTNGGCAGCTATAGATAAAGCTGA
GTTTGTACATCACAGGCTACGGCCTTCTGAGTCCATACTGCAATGTTGGTTGGGTTTGGC
GGTACGCGAGTTGGCGTAAACGCAGTTTACTTTTGATGTATCAGACTTTTGGAAATCACC
GCGAACGTCATGCATTGCTATTCATTGGACCCCAGCGATCTTGAAATGGTTGTACATGTC
AAGACTGTATCGTACTGTCGCTTTGCCGTGTAGGATTACTTCAAGCTCATACTCGCGTTT
GTCATGGATCAGTGTTGACTCTGCCTCAGTAGCGTTTGTAACGTAGACCGATACTTCTTT
CATCTTCGCCGTTGCTCTGTTCCTTGAATAAATCACATTTGCACTTCTTGAA
| SMART |
PB1_dom (IPR000270) - T[2-89] 4.8E-8 |
| ProSiteProfiles |
PB1_dom (IPR000270) - T[2-89] 14.632 |
| Pfam |
PB1_dom (IPR000270) - T[17-87] 3.2E-9 |
| Pfam |
SQSTM_UBA (IPR033741) - T[281-327] 7.2E-19 |
| SUPERFAMILY |
UBA-like_sf (IPR009060) - T[283-329] 9.44E-15 |
| CDD |
SQSTM_UBA (IPR033741) - T[288-327] 5.81307E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|