- Transcript 'Boleac.CG.SB_v3.S338...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S338.g07966.01.t
Possible name(s)
NLE1; WDR12; WDR38
Gene model
Location
S338 [48,777 / 50,091]
Amino acid sequence
Length: 437
>Boleac.CG.SB_v3.S338.g07966.01.p
MAHLQAKLLSQDPQYEIGNKAFDLPGEVTVEDLGNLVNKFLKEKHDCEPRKDDAEDEYKS
VEFDFLIDGEFLRTPLNEYVELKGLSTESVIPIEYILRQEGPKPEDEFAEDDWISDVHSF
GNYILTGSYDFGVTIRHTEDEDLIVRGIGHTQPVKSVSWVGCEDNTYYAISTSQDQSAIL
WQWKNGVDTMKPLFCCRGHSESVECVAVHPNKENFVTGSWDTSIKLWSTSPTPLEDSNEQ
EDYEKARNKKKRQRIGQRGVTRVPKYTLAGHTESVSDLVWLNNSDLCSVSWDHTIRIWDM
NEIKEKGNLRGAKVFLACDYSQENNLLVTGNSDRHVRIWDPRNKSDYGSEASVVKQNLSS
HTGWVTCVKWSPSNTNQLVSGSFDWVVKLWDIRSTKTALYDLEGHRDKVLCLDWTDSDVV
LSGGADKTLYKYRFSSK
Nucleotide sequence
Length: 1,314
>Boleac.CG.SB_v3.S338.g07966.01.t
ATGGCGCATTTACAAGCTAAACTACTATCTCAAGATCCTCAATACGAAATCGGCAATAAA
GCATTTGATCTACCAGGAGAAGTAACGGTCGAGGACCTTGGCAATTTGGTGAACAAGTTT
TTAAAAGAAAAACATGACTGCGAGCCGCGCAAAGACGATGCAGAAGATGAATACAAGTCT
GTAGAATTTGATTTTTTAATAGATGGAGAATTTTTGAGGACTCCATTAAATGAGTATGTT
GAATTGAAGGGACTTTCAACAGAATCCGTCATCCCCATTGAGTATATCTTGAGACAAGAG
GGTCCGAAACCCGAGGACGAATTCGCAGAAGATGATTGGATAAGTGACGTACACTCGTTT
GGAAACTACATACTTACAGGATCGTACGATTTCGGCGTTACTATCAGACACACTGAAGAC
GAAGATTTGATTGTCCGAGGTATCGGCCACACACAACCTGTGAAATCTGTCTCCTGGGTC
GGGTGCGAAGATAACACATACTACGCTATAAGCACTTCTCAAGATCAAAGCGCCATTTTG
TGGCAATGGAAAAATGGTGTTGACACAATGAAGCCATTATTTTGTTGTCGTGGTCACTCA
GAAAGTGTTGAATGCGTCGCAGTTCATCCAAATAAGGAGAACTTTGTTACCGGTTCGTGG
GACACTTCTATTAAATTATGGTCGACATCACCCACACCACTAGAGGACTCTAATGAGCAA
GAGGATTATGAAAAAGCCAGAAACAAGAAGAAAAGACAACGTATTGGACAACGCGGTGTC
ACCAGAGTACCAAAATACACCTTAGCCGGCCATACGGAGTCAGTATCGGATCTTGTATGG
CTCAATAATTCCGACTTGTGTAGTGTATCGTGGGATCATACGATTCGAATATGGGACATG
AACGAAATCAAAGAAAAAGGAAACTTACGAGGAGCAAAAGTCTTTTTGGCGTGCGATTAC
TCTCAAGAAAATAACCTTTTGGTAACTGGGAACTCGGATCGGCACGTCAGAATTTGGGAT
CCACGTAACAAGAGCGATTACGGCAGTGAAGCGTCTGTTGTCAAGCAGAACTTATCATCC
CACACCGGTTGGGTAACGTGCGTCAAATGGTCTCCTAGCAACACCAATCAATTGGTGTCC
GGGTCTTTTGATTGGGTGGTGAAATTGTGGGACATACGCAGCACAAAGACTGCACTTTAT
GACCTGGAGGGTCACCGCGATAAAGTCCTTTGCTTGGATTGGACTGATTCAGATGTTGTT
CTTAGTGGTGGGGCGGATAAAACTTTGTACAAATACAGGTTCAGTTCGAAGTAA
| Hamap |
WDR12/Ytm1 (IPR028599) - T[2-436] 30.021 |
| Pfam |
NLE (IPR012972) - T[5-79] 2.6E-14 |
| SMART |
WD40_repeat (IPR001680) - T[101-137] 170.0 - T[140-182] 0.81 - T[189-228] 1.2E-8 - T[261-299] 6.2E-7 - T[302-340] 0.075 - T[351-391] 1.4E-9 - T[395-433] 4.4E-4 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[102-433] 9.0E-66 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[113-436] 2.29E-51 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[121-437] 34.144 |
| Pfam |
WD40_repeat (IPR001680) - T[191-228] 1.4E-7 - T[264-299] 2.6E-5 - T[314-340] 7.1E-4 - T[357-391] 3.8E-5 - T[399-429] 0.11 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[196-228] 13.048 - T[268-301] 10.976 - T[320-349] 10.141 - T[358-400] 14.519 - T[402-437] 9.038 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[286-300] 4.1E-7 - T[327-341] 4.1E-7 - T[378-392] 4.1E-7 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[286-300] . - T[378-392] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR12_HUMAN | 44.368 % | 365 | 1.28E-123 |
