- Transcript 'Boleac.CG.SB_v3.S2.g...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S2.g04542.01.t
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
S2 [391,310 / 393,467]
Amino acid sequence
Length: 360
>Boleac.CG.SB_v3.S2.g04542.01.p
MTEKETFDEAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPEVTKAEGKDY
AVHKLILGTHTSDEQNHMIIASVQLPTDDATFDASHYDSEKGEFGGFGSVSGKIEIETKI
NHEGEVNRARYMPQRPCIIGTKTPSSDVLVFDITKHPSKSDPSGACKPDIRLKGHQKEGY
GLSWNPNVTGHLLSASDDHTICLWDVGTTLKEGRELDANEFILATGSADKTVALWDLRNL
KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL
LFIHGGHTAKISDFSWNINEPWVICSVSEDNIMQVWQMAENIYNDEEQDAGCSEMEQSTS
Nucleotide sequence
Length: 1,488
>Boleac.CG.SB_v3.S2.g04542.01.t
ATGACAGAGAAGGAAACTTTCGACGAGGCAGTAGAAGAGCGTGTAATAAATGAAGAGTAC
AAAATATGGAAGAAGAACACCCCATTTTTGTATGACTTGGTGATGACTCACGCTCTTGAA
TGGCCAAGTCTGACTGTGCAATGGCTACCAGAAGTTACCAAGGCTGAAGGCAAAGATTAT
GCCGTCCATAAATTGATATTGGGAACTCACACATCAGATGAACAGAATCATATGATTATT
GCCAGTGTTCAACTCCCTACTGACGATGCAACATTTGATGCATCTCATTATGATAGCGAA
AAGGGGGAGTTTGGTGGCTTCGGATCCGTAAGCGGAAAAATTGAAATTGAAACCAAGATT
AATCATGAAGGAGAAGTGAACCGTGCAAGATATATGCCGCAGAGGCCATGCATCATAGGA
ACTAAAACACCCTCTAGTGATGTTTTAGTATTTGATATTACCAAGCACCCATCCAAATCA
GATCCATCCGGTGCATGCAAGCCTGATATTAGACTGAAGGGACATCAGAAGGAAGGCTAT
GGCCTGTCATGGAATCCAAATGTAACTGGCCATTTGCTAAGTGCATCAGATGATCATACT
ATCTGCTTATGGGATGTTGGAACAACATTGAAAGAAGGACGTGAGCTTGATGCCAATGAG
TTTATACTGGCGACTGGATCAGCTGACAAAACTGTCGCACTTTGGGACTTGAGAAATCTA
AAGCTCAAACTGCACTCCTTTGAGTCACATAAGGATGAAATATTCCAGGTTCAGTGGTCT
CCCCATAATGAGACCATCCTCGCTTCAAGTGGGACTGACAGACGCTTGAATGTTTGGGAT
TTGAGTAAAATCGGTGAAGAACAATCGGCAGAAGATGCTGAAGACGGTCCTCCTGAATTA
CTGTTCATTCATGGTGGCCATACAGCCAAGATTTCGGACTTTTCATGGAATATAAATGAA
CCGTGGGTAATCTGCTCAGTATCAGAAGACAACATCATGCAAGTTTGGCAGATGGCAGAG
AATATATACAATGATGAGGAGCAGGACGCTGGATGTTCAGAAATGGAACAATCAACATCA
TGAGACCTGTATGAAGGAATTGGTTCATCATGTACAGTTTTGTAACTACGCAATTCTTCT
TGATGGCATCTACTCGCCAACAAAACAATATTGCCATCCAAGATACCTAGATGGAGGTAC
ATGCTGGATGTTGCTATTGGTGTCTCTAGAAGCAGTGCATATCTTATTACTCGCTGTTTA
AAGGTTGCCACATGTCGGTTATGCATTACAATGACCACCATCAATATCTACTGTACAGTT
CATACAGTGATACCGGTATTTGACTGTTTTATCATTGTGGGAGATGTAATGCTATTAACC
ATATATTGACAATTACTTTTTACCCCAAGGATGAAAAGTGAATTCATGTTACATATGTGC
ACAGTTTTCACTTTAGATTGTTTAAATAAATAAGCCTGGCTTGATATA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[2-218] 1.7E-78 - T[219-360] 3.1E-54 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[18-86] 2.4E-27 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[112-343] 1.56E-37 |
| SMART |
WD40_repeat (IPR001680) - T[113-152] 120.0 - T[165-205] 5.9E-6 - T[209-236] 310.0 - T[240-280] 7.0E-7 - T[297-337] 0.011 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[172-206] 11.678 - T[223-239] 9.205 - T[247-289] 12.948 |
| Pfam |
WD40_repeat (IPR001680) - T[172-205] 0.013 - T[244-280] 2.7E-4 - T[301-336] 0.072 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[172-346] 19.486 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[192-206] 9.4E-9 - T[223-237] 9.4E-9 - T[267-281] 9.4E-9 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[192-206] . - T[223-237] . - T[267-281] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RBBP7_HUMAN | 68.171 % | 581 | 0 |
| RBBP4_HUMAN | 73.366 % | 604 | 0 |