Aniseed - Transcript Card

Transcript 'Phmamm.CG.MTP2014.S1...' >
Transcript 'Boleac.CG.SB_v3.S280...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S280.g06636.01.t

Possible name(s)

COPS7B; EIF3M; PSMD13

Gene model

Boleac.CG.SB_v3.S280.g06636

Location

S280 [24,841 / 27,927]

Sequences

Amino acid sequence

Length: 374

>Boleac.CG.SB_v3.S280.g06636.01.p
MSVPAFIDLPPVQQAKELKEYLRSLGADIEADXKEELYDDVSDIITVTESLWKTTDDRDI
EGVINSILSLLFVIPSNCAPLIKTLCEQLLKVADSGKAQLSMRLLHNFFHGYDIKTPFLY
DTYCTWVKISSMNGNIGAVPTDLKKLNSWMDGWKCTNAQRHDLLRLVYDAQIKSGKHGEA
ANTMISLLSAYTDDDASQAREDAHRCITRALEDNDTYVYDHLLALKPVKFLEGETIYDLL
TIFSKGKLTDYKKFHXENQAFLDKIGLDHSQCIRKIRLLTLIDVVSSCNEAAFGDIESEL
QLEQDELEEFIIHAIQSKLITGKIDHLNRKLVVSHTTPRTFKKEQWQMLSDRLMEWRRNL
NSAHARLSTIDPIS

Nucleotide sequence

Length: 1,408

>Boleac.CG.SB_v3.S280.g06636.01.t
GTTTCCAATGGAATATCGACGTAACCGGCAGGTACTAGTATACCGGTAGTGGATAACGCA
GATAAATNGTCTCGTTACGTGAAATTTTGGAGCCACCGTGTCTTCGTGAGATAATTNTTT
ACGGCAAACATGAGCGTTCCTGCATTTATTGACCTTCCACCTGTTCAGCAGGCGAAAGAG
TTGAAAGAGTATTTGAGGTCTCTTGGTGCAGATATTGAGGCAGACAANAAAGAAGAGCTG
TACGATGATGTTAGTGATATCATTACTGTTACTGAATCCCTTTGGAAAACAACAGATGAT
AGAGATATAGAAGGTGTGATCAATAGCATTCTCTCATTGCTATTTGTAATTCCGTCAAAC
TGCGCTCCTTTGATAAAGACTTTATGTGAGCAACTTCTGAAAGTTGCCGATTCTGGAAAA
GCTCAACTCAGCATGCGATTGTTGCATAACTTTTTCCATGGATATGATATAAAAACTCCG
TTTCTATACGACACATATTGTACTTGGGTTAAGATATCTTCAATGAATGGTAACATCGGT
GCTGTTCCAACTGATTTGAAAAAGCTAAACTCATGGATGGATGGATGGAAATGTACCAAT
GCCCAGAGGCATGACTTGCTGCGTCTGGTGTATGATGCCCAAATTAAAAGTGGCAAGCAC
GGTGAAGCAGCTAATACAATGATAAGTTTACTNAGTGCCTACACAGACGATGATGCTTCG
CAAGCCAGAGAGGATGCTCACAGATGTATTACGAGGGCACTGGAAGACAATGACACATAT
GTGTATGATCATTTGCTTGCTCTCAAACCAGTCAAGTTTTTAGAGGGAGAAACAATCTAT
GATCTTCTTACGATATTCTCAAAAGGGAAACTCACAGATTACAAAAAGTTTCATTNGGAA
AATCAAGCATTTTTGGATAAAATTGGTCTAGATCACTCGCAGTGTATACGGAAAATTCGG
CTCTTAACATTGATTGATGTCGTCAGCAGCTGCAATGAAGCTGCTTTTGGAGACATTGAA
TCGGAACTCCAGCTTGAGCAGGACGAGCTTGAAGAATTTATAATACACGCTATTCAAAGC
AAGTTGATAACTGGCAAGATTGATCATTTGAACAGGAAGCTTGTTGTGAGCCACACCACG
CCACGCACGTTCAAGAAAGAACAGTGGCAGATGCTGTCTGATCGCCTCATGGAATGGAGA
AGGAACCTCAATAGCGCACACGCCCGACTATCGACGATTGATCCAATTTCCTGAATGTAT
TCAGCGACGGAATCGCGGCTGTTGTACGTCGAGGGTATCCAGATGGGGGCTTGTGTGTTC
AGGTTTGCTACAACCGAAATTTTTGTTGTGATACGGACGATAAAGATTTTGATGATGGGT
GTATGAATACATTATTTTTCGGAATGTA

InterProScan

Hamap	eIF3m (IPR027528) - T[1-373] 21.183
SUPERFAMILY	ARM-type_fold (IPR016024) - T[17-222] 8.64E-5 - T[255-289] 8.64E-5
Pfam	PCI_dom (IPR000717) - T[236-334] 2.0E-13
SMART	PCI_dom (IPR000717) - T[267-356] 8.6E-17
SUPERFAMILY	WH_DNA-bd_sf (IPR036390) - T[271-339] 7.89E-5

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
EIF3M_HUMAN	45.161 %	341	7.34E-116