- Molecular Tool 'cieg53p22-MO (Hamada's MO)' >
- Molecular Tool 'cicl03c13-MO (Hamada's MO)' >
- Transcript 'Boleac.CG.SB_v3.S27....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S27.g06355.01.t
Possible name(s)
DAW1; POC1B; SPAG16
Gene model
Location
S27 [94,458 / 99,892]
Amino acid sequence
Length: 614
>Boleac.CG.SB_v3.S27.g06355.01.p
MTTEAEEGPFYLEAVSIEDDSDDGYQYEEIPLDDDTSTVDLIEDLNDAVYAIEESKRTVK
SHGQPIEPASSRDTALSHRPEVIDDFVRNFLLKMGLHRTLNSFQTEWYELQQRGQLSDED
LGVVPDAYIQNMNLRDEVKKLKSELEKFKSAGRKTKDVFVKVQKERDYHKMHHRRVVQEK
NRLIEDIKRLKSHYRSYEPTLRQLKHKYELAMKEKMLTKLERDRVAGQATGLQATLKNLQ
SGRQDPIPALTGYRAEREKNQDGPTQIALREQRLAKQTGVETVCAANEKRAAHEKDSIFP
RDDCINPLLSLSYPPPAHLTRMGGLKVTQTISAHDLAISCVKIHPRKQVAVTTSDDRLWK
MWSLPDGEIIMTGDGHNDWIADCDFHPLGKQLVTGSGDTTVKIWDFVKASCVQTFGEHTQ
AVWGVSWHSCGDFIASCSMDCSSKIWDVHSERCRSTLRGHTDSVNSIKFLHYSNTLLTSS
ADKTLCLWDARNGLSAQTFYGHMHSVNDAVFNMEGNTIASCDSYGVVNVWDSRVVTPKAT
INVGPHPANKLAFDPTGKLLAVGSNDGTIKMIDLSNDEHSLLSRHEDAVQSVTFDRTGQL
LISGGSDGMLQLWS
Nucleotide sequence
Length: 2,084
>Boleac.CG.SB_v3.S27.g06355.01.t
GCACTTACAGGTAAAAGTCTCTCTGGCATCGTGGCACGTACCGCTGTTCATTGAAGGCAG
CCAGGAAATTCTTGCGGTGGGTTGCAAAGATGACTACAGAAGCTGAAGAAGGCCCGTTTT
ATCTTGAAGCTGTGTCTATTGAAGATGATTCAGATGATGGCTACCAATATGAAGAGATTC
CATTAGACGATGACACGAGTACAGTAGATTTGATTGAGGACTTGAATGATGCTGTTTATG
CAATTGAAGAGAGTAAGAGGACTGTAAAAAGCCACGGACAACCTATAGAGCCAGCATCTT
CTCGTGATACCGCTCTTTCTCATCGACCTGAAGTCATTGATGACTTTGTTCGAAATTTTC
TTCTGAAGATGGGATTGCACAGGACACTAAACTCTTTTCAAACAGAATGGTATGAATTAC
AACAAAGGGGGCAATTATCTGATGAAGATCTTGGAGTTGTTCCAGATGCATATATTCAAA
ACATGAACTTGAGGGATGAAGTAAAGAAACTTAAGAGTGAACTTGAAAAATTTAAATCAG
CAGGAAGAAAAACCAAAGATGTTTTTGTCAAAGTGCAAAAAGAGAGAGACTATCACAAAA
TGCACCACCGACGAGTTGTGCAAGAAAAGAACAGACTCATTGAAGACATTAAAAGGTTGA
AAAGTCACTATAGATCTTATGAGCCTACGCTGAGACAACTTAAACACAAATATGAATTAG
CCATGAAAGAGAAAATGCTAACAAAGCTGGAAAGAGACCGTGTAGCTGGGCAGGCGACTG
GATTACAAGCAACATTAAAAAATCTTCAAAGCGGTCGTCAAGACCCAATCCCTGCACTGA
CGGGATATCGGGCTGAGCGTGAAAAGAATCAAGATGGACCAACTCAGATTGCATTACGAG
AACAGCGACTAGCAAAACAAACAGGAGTGGAGACAGTTTGTGCTGCAAATGAGAAAAGAG
CTGCACACGAGAAGGACAGTATATTTCCACGTGATGACTGCATCAACCCCCTTCTGTCAT
TGTCATATCCACCACCTGCACATTTAACAAGAATGGGAGGTTTAAAGGTTACGCAGACAA
TATCAGCACATGATCTGGCAATCAGCTGTGTCAAAATTCATCCACGAAAGCAAGTCGCAG
TGACAACGTCTGATGATAGACTATGGAAGATGTGGTCACTTCCTGATGGTGAAATAATTA
TGACTGGAGATGGACATAATGATTGGATTGCAGATTGCGACTTTCATCCACTAGGGAAAC
AACTTGTTACTGGAAGTGGAGATACCACTGTGAAAATATGGGATTTTGTTAAAGCAAGCT
GTGTGCAAACATTTGGTGAACATACCCAAGCAGTATGGGGTGTATCATGGCATTCATGCG
GAGATTTCATAGCATCATGTTCAATGGATTGTTCTTCAAAAATATGGGATGTACACAGCG
AGAGATGCCGCTCTACTTTAAGAGGTCACACCGATTCTGTCAATAGTATAAAATTTTTAC
ATTACTCCAACACGCTTCTGACGTCTTCTGCTGATAAGACTCTGTGCCTTTGGGACGCAC
GTAATGGACTCAGCGCCCAAACGTTCTACGGACATATGCATTCGGTAAATGATGCTGTCT
TCAATATGGAGGGGAACACAATTGCTTCATGCGACAGTTACGGGGTGGTCAATGTATGGG
ATTCAAGAGTAGTTACACCTAAAGCAACAATCAACGTTGGACCGCATCCAGCAAACAAGC
TTGCATTTGATCCAACCGGGAAATTACTTGCTGTTGGTAGCAATGATGGAACTATCAAGA
TGATTGACTTATCAAACGACGAACACAGCTTGCTATCTCGTCACGAAGATGCTGTCCAAT
CAGTGACCTTTGATAGAACGGGACAACTACTAATTTCTGGGGGGTCAGATGGAATGTTGC
AATTGTGGTCGTGAAAAGTACATAATGTGTATTCTGCACATACGCTACACACTGTATAAA
TCTGTTTAGGAATGAAGATATCTGTGATGAAATCATTATTTACAATGACACGTTCTCATC
CAATCGGTTCTGAAACAACATTTAGCATGGTGTGTCGATCACGG
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[154-450] 1.8E-35 - T[451-578] 1.0E-32 - T[579-614] 4.6E-6 |
| SMART |
WD40_repeat (IPR001680) - T[324-363] 2.9E-4 - T[366-405] 1.0E-9 - T[408-447] 8.6E-9 - T[450-489] 9.5E-10 - T[492-531] 0.0023 - T[534-573] 3.5E-4 - T[575-614] 4.8E-6 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[324-614] 8.47E-73 |
| Pfam |
WD40_repeat (IPR001680) - T[328-363] 0.16 - T[369-405] 3.1E-6 - T[410-447] 2.0E-6 - T[452-489] 5.6E-7 - T[497-531] 0.031 - T[549-572] 0.022 - T[582-614] 0.0045 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[331-614] 57.713 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[331-372] 10.843 - T[373-414] 14.285 - T[415-456] 11.845 - T[457-498] 14.418 - T[499-531] 9.506 - T[551-582] 8.67 - T[582-614] 15.621 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[392-406] . - T[434-448] . - T[476-490] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[392-406] 5.4E-7 - T[476-490] 5.4E-7 - T[601-614] 5.4E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1B_HUMAN | 31.338 % | 137 | 1.27E-34 |
| SPG16_HUMAN | 48.539 % | 587 | 0 |
| DAW1_HUMAN | 29.268 % | 139 | 7.35E-36 |