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TRANSCRIPT CARD

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  1. Transcript 'Boschl.CG.Botznik201...'
  2. Transcript 'Boleac.CG.SB_v3.S26....'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S26.g06206.01.t

Possible name(s)

DDX1; DDX17; DDX5

Location

S26 [508,243 / 514,040]

Sequences

Amino acid sequence

Length: 744

>Boleac.CG.SB_v3.S26.g06206.01.p
MTAFEELGAMPELGKAVDEMGWMLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVHESKCDTGTSSSKKSSSNTLTAKWQMNPHDRGKSFATSSDGLLCQCREFKEWQGCR
STRAVTEGKYYYEVTCKDEGLCRVGWSTIEADLNLGTDKFGFGFGGTGKKSFNRQFDTYG
ESFTMHDVIGCYIDVSQGKISFSKNGIDLGHAFDIPGHLRQQPFYATCGVKNAELLFNFG
DSPFKHPPSGGYNALSSASESQSLPSPKSGSAGAARQANKRKPNNAPYAIIIEPSRELAE
QTLNNVVNLKKYVKNPGISEVLIIGGVSPSEQLKCIENGVDIVVATPGRIDDFISSGKLX
LDQVRFLVLDECDGLLSAGNESMIKRMHSKMPQVTPDGKRLQVIVCSATLHSFDVKKLAE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDRSYEMLKQDARIKTDGVHYNDRVGPRD
RPSDEKYSEAIKILKGEYCIKAIKKHNMDQCIIFCRTKLDCDNMERYFTKQGGGPKSRGH
LFSCVCLHGDRKPQERRENLEKFKKGEARHLICTDVAARGLDVKGIPFVINVTLPDEKQN
YVHRIGRVGRAERMGLAISLVSIENREKVWYHSNCNNRGKGCYNTSLTDVGGCCIWYDEG
SLLADIEEHLKITIDQVTPDLEIPVNEFDGKVVYGKKRAMKNQSLYKGHADVLAPAVKDL
QALEKAAQTSFLRLAMESFSSRKT

Nucleotide sequence

Length: 2,388

>Boleac.CG.SB_v3.S26.g06206.01.t
ATTTATTCGCTCTGATTTTGTTTTGCCTCTCATCTACTCATCTCGAGCAACCCTCGTCCG
TAAGCTTGGAGCNTAACCCTTCTGTCCGGTACGCACTTGCTCATCTATAGAGTAAGAAAA
ATGACTGCATTTGAGGAACTTGGCGCTATGCCTGAGCTTGGCAAAGCTGTTGACGAAATG
GGCTGGATGCTACCCACTGATATACAAGCTGAATCAATACCTCTTATCCTTGGTGGTGGT
GATGTGTTGATGGCTGCTGAGACGGGATCTGGAAAAACTGGTGCTTTCAGTATTCCCGTA
ATCCAGATCGTCCATGAATCAAAATGCGACACCGGAACAAGCTCCTCAAAGAAGTCTTCA
AGCAATACCTTGACGGCGAAATGGCAGATGAATCCACATGATCGAGGCAAATCATTTGCC
ACAAGTTCTGATGGCCTTCTTTGTCAATGTAGAGAGTTCAAGGAATGGCAAGGCTGTCGC
TCAACAAGAGCTGTCACAGAAGGAAAGTACTACTATGAAGTAACATGCAAGGATGAAGGC
CTTTGTCGTGTGGGGTGGTCCACAATTGAAGCAGATTTAAATCTCGGGACTGATAAGTTC
GGATTTGGGTTTGGGGGAACCGGAAAGAAATCATTCAACCGTCAGTTTGATACATATGGA
GAATCCTTCACAATGCATGATGTTATCGGTTGCTATATTGATGTCAGCCAGGGAAAAATA
AGTTTCTCTAAGAATGGGATCGACCTTGGACATGCTTTCGACATACCTGGACATTTGAGG
CAGCAGCCATTTTATGCTACATGCGGAGTGAAGAACGCTGAGTTACTGTTTAATTTTGGT
GATTCTCCGTTCAAACATCCACCATCTGGAGGATATAATGCTTTGTCATCAGCATCTGAA
TCTCAATCACTACCTTCACCAAAATCTGGTTCAGCTGGAGCTGCCAGGCAGGCAAACAAA
AGAAAGCCCAATAATGCACCATATGCCATCATAATAGAACCATCACGTGAGCTAGCAGAG
CAAACACTGAATAATGTTGTGAACTTGAAGAAATACGTGAAGAACCCGGGTATTTCTGAA
GTTTTGATCATTGGTGGTGTGAGTCCTAGCGAGCAACTCAAATGTATTGAGAATGGAGTT
GATATTGTTGTGGCAACACCAGGGAGAATCGATGACTTCATTTCATCAGGCAAGCTNAGN
CTTGACCAAGTTCGGTTTCTTGTACTGGATGAATGTGACGGATTGCTTTCTGCAGGAAAT
GAAAGCATGATTAAGAGAATGCATTCAAAAATGCCACAGGTTACTCCTGATGGTAAACGT
TTACAAGTAATTGTTTGCTCTGCAACCCTGCATAGCTTTGATGTGAAAAAGCTGGCAGAG
AAAATCATGCATTTCCCAACATGGGTTGATTTGAAAGGCGAGGACTCTGTGCCAGAAACA
GTTCATCATGTTGTGGTACCAGTCAACCCGAAGACGGATAGGAGTTATGAGATGCTGAAG
CAAGATGCCAGAATAAAAACTGACGGAGTACATTACAATGATAGAGTAGGCCCCAGAGAC
AGACCTTCAGACGAGAAATATTCTGAGGCAATCAAAATTTTAAAAGGTGAATATTGCATC
AAAGCGATCAAGAAGCATAATATGGACCAGTGCATCATATTTTGTCGTACTAAACTAGAC
TGTGATAATATGGAGCGTTACTTCACCAAGCAGGGTGGAGGTCCTAAATCAAGAGGACAT
CTATTTTCATGCGTTTGTCTCCATGGAGACCGAAAGCCTCAAGAAAGAAGGGAAAATTTG
GAAAAGTTCAAAAAGGGCGAAGCTCGGCATCTTATTTGCACTGATGTGGCTGCCCGTGGG
CTGGATGTCAAAGGAATTCCTTTCGTTATAAATGTTACGCTGCCAGATGAAAAACAAAAC
TATGTTCATCGCATTGGAAGAGTGGGTCGGGCAGAACGAATGGGATTAGCAATTTCCCTT
GTATCGATAGAGAATAGAGAAAAGGTATGGTACCATAGCAACTGCAATAACCGTGGTAAA
GGGTGCTACAATACATCACTAACTGATGTTGGAGGGTGTTGCATTTGGTATGATGAGGGG
TCGCTGTTAGCTGATATAGAGGAGCATCTCAAGATTACCATTGATCAAGTTACACCAGAC
CTCGAAATTCCTGTGAATGAATTTGACGGAAAGGTGGTCTACGGGAAAAAGCGTGCAATG
AAAAATCAGTCATTATACAAAGGTCATGCCGACGTGTTGGCCCCTGCCGTAAAGGACTTG
CAGGCTCTTGAGAAGGCGGCACAAACTTCTTTTTTAAGATTGGCAATGGAAAGCTTCTCT
TCTCGTAAAACGTGAACTTCTGTAGCTTGTGACAATAAAAGCATTGAC

InterProScan

ProSiteProfiles
RNA_helicase_DEAD_Q_motif (IPR014014) - T[2-30] 9.785
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[2-68] 3.04E-14 - T[287-452] 5.13E-56 - T[495-631] 5.13E-56
SMART
Helicase_ATP-bd (IPR014001) - T[21-444] 3.8E-45
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[26-418] 8.5E-65
ProSiteProfiles
B30.2/SPRY (IPR001870) - T[68-244] 18.791
SUPERFAMILY
ConA-like_dom_sf (IPR013320) - T[86-247] 3.84E-37
SMART
SPRY_dom (IPR003877) - T[127-243] 5.2E-28
Pfam
SPRY_dom (IPR003877) - T[129-240] 3.3E-21
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[284-428] 19.041
ProSiteProfiles
Helicase_C (IPR001650) - T[486-685] 18.421
CDD
Helicase_C (IPR001650) - T[495-620] 1.79974E-31
Pfam
Helicase_C (IPR001650) - T[497-611] 1.2E-25
SMART
Helicase_C (IPR001650) - T[522-612] 2.2E-24

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DDX1_HUMAN 67.344 % 970 0
DDX17_HUMAN 30.499 % 148 4.89E-37
DDX5_HUMAN 29.565 % 147 3.3E-37