- Transcript 'KH2012:KH.C13.173.v3...' >
- Transcript 'Cisavi.CG.ENS81.R98....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R98.284679-309909.03588.t
Possible name(s)
CHL1; L1CAM; NRCAM
Gene model
Location
R98 [292,866 / 309,888]
Amino acid sequence
Length: 1,033
>Cisavi.CG.ENS81.R98.284679-309909.03588.p
IFPAVPLPDRPPTITSPVLTTEPRIVLRDDTLRMKCIATGKPVPSVRWEKLNGNSVVSWP
NGRFRTEDFGRTAVISNASYGDSADYRCTATNALGEATRISKVLVHARPFFSVPENAPHD
VIKTPGSNVTIRCQAEGIPAPEVEWRVNGVPIAETSPMDNRVIHPTKIRISNLKVSDSAV
YQCIASNMHNSIIKQAYVNVLISMPLPVSSEDVEYVQVLGKTVEMKCNVFGSPSPAISWQ
KDGNKITENERFLIRKSKYLRISEVTFDDAGAYTCVATNEYGNATLSTSLTVFRRTKIQP
AAQYRYFVRRGESVTMSIDIDDGVVQGPVQWFKSDVLIGRGINYDVNNAAFTDSGSYKVM
VNTSLDHAAVHLTLVVQVSRNAPLSIDIPLPPLDFYVSPKSGGSPLDVTFTWQPAEDNYS
PIQEYKIEFEKDNYRPGKWFPLVDSIPGDRTSFDVTLAAGLRYKFRLWALNGIGWSEAPS
AETGSAPTANPSGVSGKGNTPTNMIITWDPVSPVGRNGPEFGYQITYCTAPDCTDKEVLY
VDGEVESYEVVNLPTYTQYIINIMSYNNIGNASVPQDVLGYSGEDVPLSAPSDVTVETNE
DDATVVIVRWQKVDPDSVRGKVLGYIVSYETPSSNELKERSVGDTDMTGIAGLKPFTDYS
FKVAVYNDYSSGPFSQSYVITTPESTPGPPSTMRLRTTTDTGAHIAWGRPQEENGDVIGY
VIKFVCLNDSTEIGPISVEGTSYVTSQLRPNHMYDVTVAAQTLKGVGETANIVMSTMAGE
GCIKQPINQVPSTYRSAFNVTAGMTTANVTWYQVGGIPATKYFVEYKKSTEDEWKMSHGS
YSTEKTGEGVPLAGLDPGTSYLVRIVSVNAYDQTKIMFRRGPATASGAAGVVGEVWFIVL
MCIIVLLLIIIVIVCLLRRRKGGKYSVAEKEGQLVDQESQQIKSDEYNDETDDAKKPLKS
PPPVNGKSTPPDISSAVPLRTRGDSVAGDSIDAFGDDDAREFNEDGSFIGQYGAHESGES
SAAATPADDNPVI
Nucleotide sequence
Length: 3,099
>Cisavi.CG.ENS81.R98.284679-309909.03588.t
ATATTTCCAGCTGTTCCACTGCCGGACCGCCCACCAACTATTACGTCACCCGTCCTTACT
ACGGAACCACGAATTGTGCTCAGGGACGACACCTTACGGATGAAATGTATTGCTACGGGA
AAACCGGTACCGAGTGTACGATGGGAGAAATTAAATGGAAATTCGGTCGTTTCGTGGCCG
AACGGTCGATTTCGAACTGAAGATTTCGGACGAACAGCTGTCATTAGCAACGCGAGTTAT
GGGGATAGCGCCGATTACAGGTGCACAGCTACGAATGCGTTGGGGGAGGCGACGCGGATA
TCGAAGGTTCTGGTGCACGCTCGACCATTCTTCTCTGTCCCCGAAAATGCGCCTCATGAC
GTCATAAAGACACCTGGTAGTAACGTCACAATACGATGTCAAGCGGAGGGGATTCCCGCG
CCGGAAGTCGAGTGGAGGGTGAACGGGGTTCCGATCGCAGAAACTTCCCCGATGGATAAC
AGAGTGATCCATCCAACTAAAATTCGAATCAGCAATCTGAAGGTGTCTGACTCGGCCGTG
TACCAATGCATCGCTAGCAACATGCATAACTCCATTATTAAACAAGCATATGTGAATGTG
CTCATTTCTATGCCTTTGCCTGTATCGTCGGAAGACGTGGAATACGTGCAAGTGTTGGGG
AAAACTGTGGAGATGAAATGTAATGTGTTTGGGTCGCCCTCTCCCGCCATCTCGTGGCAG
AAAGATGGAAACAAAATTACAGAAAACGAAAGGTTTCTTATACGGAAAAGTAAATATCTT
CGCATCAGTGAAGTAACATTCGACGATGCTGGAGCCTACACTTGCGTAGCGACAAATGAA
TACGGGAACGCAACACTCAGCACCTCACTTACAGTGTTCCGTCGTACGAAGATACAACCA
GCTGCCCAATACCGCTATTTCGTCAGGCGGGGAGAATCAGTCACTATGTCTATTGACATT
GATGACGGTGTGGTACAAGGACCAGTTCAATGGTTCAAATCCGATGTTCTTATTGGACGA
GGAATCAATTATGACGTCAACAATGCGGCATTCACGGATAGCGGAAGCTACAAGGTCATG
GTTAACACCAGTCTTGACCACGCGGCTGTGCACTTGACTCTGGTTGTTCAAGTATCACGA
AATGCACCACTTTCCATAGATATCCCATTACCTCCGCTGGATTTCTATGTTTCTCCCAAA
TCGGGGGGATCCCCCCTGGATGTAACGTTCACATGGCAACCAGCTGAAGACAATTACTCC
CCGATACAAGAATACAAGATAGAATTTGAGAAAGACAACTATCGACCGGGGAAGTGGTTT
CCATTGGTCGATTCGATACCTGGCGACCGAACCTCTTTCGATGTAACCTTGGCAGCTGGG
TTGCGATATAAATTCCGCTTGTGGGCGCTAAACGGCATTGGGTGGAGCGAGGCGCCCAGT
GCTGAGACAGGCTCCGCTCCAACAGCAAACCCAAGTGGGGTGTCGGGCAAGGGGAATACC
CCAACCAATATGATCATCACGTGGGACCCGGTGAGCCCAGTGGGGCGTAACGGACCGGAA
TTCGGGTACCAGATTACATACTGCACCGCTCCCGACTGTACCGACAAAGAAGTTCTTTAT
GTGGACGGGGAAGTCGAATCTTATGAAGTAGTCAACCTTCCAACATACACCCAATACATC
ATTAACATTATGAGCTACAATAATATCGGTAACGCTTCCGTACCGCAAGACGTACTGGGA
TACTCTGGCGAAGACGTTCCATTGTCTGCTCCAAGTGATGTCACAGTTGAAACAAACGAA
GATGACGCAACAGTGGTGATTGTGAGGTGGCAAAAAGTTGACCCAGATTCAGTAAGAGGA
AAAGTGCTGGGTTACATCGTGTCCTACGAGACACCTTCAAGCAATGAACTGAAAGAAAGA
AGTGTGGGCGACACCGATATGACAGGAATCGCTGGACTCAAACCTTTCACCGATTACTCG
TTTAAAGTGGCCGTGTACAACGACTATTCCAGCGGACCATTCTCCCAATCCTACGTCATA
ACCACCCCTGAAAGCACCCCCGGCCCCCCATCTACTATGAGACTCCGTACAACAACCGAT
ACTGGGGCACACATTGCATGGGGACGCCCCCAAGAAGAGAATGGTGATGTCATCGGCTAT
GTGATCAAATTCGTATGCTTGAACGATTCAACTGAAATTGGACCAATCAGCGTCGAAGGT
ACATCTTACGTCACCTCTCAGTTGCGTCCGAATCATATGTATGACGTCACAGTGGCCGCG
CAAACTTTAAAGGGGGTCGGTGAAACAGCAAACATTGTGATGTCAACAATGGCGGGAGAA
GGTTGCATAAAGCAGCCAATTAACCAAGTACCATCCACTTATCGGTCTGCATTCAATGTA
ACTGCTGGTATGACAACTGCAAACGTCACGTGGTATCAGGTGGGGGGAATTCCCGCAACC
AAGTATTTCGTCGAATACAAGAAATCAACTGAAGACGAGTGGAAAATGAGCCATGGTTCT
TATTCTACTGAGAAAACCGGCGAGGGCGTGCCGCTGGCTGGTCTCGATCCCGGTACCTCC
TACTTAGTGAGAATAGTGTCGGTGAACGCGTATGACCAGACGAAGATTATGTTCCGCCGT
GGCCCTGCAACCGCATCGGGGGCCGCTGGGGTTGTCGGCGAAGTTTGGTTCATCGTGCTA
ATGTGCATCATTGTCCTGCTGCTGATTATCATCGTCATAGTGTGCCTTCTTCGTCGACGG
AAAGGCGGAAAGTATTCAGTTGCAGAGAAAGAAGGACAGCTCGTGGATCAGGAATCCCAG
CAGATTAAATCCGACGAATACAACGACGAAACAGACGACGCGAAGAAGCCATTGAAGAGT
CCGCCGCCGGTGAACGGAAAATCCACTCCTCCCGACATATCTTCCGCCGTTCCGCTGCGC
ACGCGTGGGGACAGTGTAGCCGGCGATTCCATCGACGCGTTCGGTGACGACGACGCGCGA
GAATTCAACGAGGATGGTTCGTTCATCGGCCAGTACGGGGCGCACGAGAGCGGGGAAAGC
AGCGCCGCAGCGACACCTGCCGACGACAATCCGGTGATA
| Gene3D |
Ig-like_fold (IPR013783) - T[8-114] 3.4E-15 - T[115-201] 8.1E-19 - T[208-293] 6.0E-21 - T[386-488] 3.6E-13 - T[489-585] 1.5E-17 - T[586-687] 3.9E-19 - T[688-787] 1.2E-14 - T[788-887] 1.7E-8 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[12-101] 10.499 - T[109-199] 12.423 - T[205-291] 13.639 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[21-111] 3.39E-16 - T[107-200] 1.95E-17 - T[216-294] 8.08E-22 - T[306-383] 3.52E-5 |
| SMART |
Ig_sub (IPR003599) - T[21-106] 7.2E-6 - T[118-201] 3.6E-11 - T[212-293] 3.7E-11 - T[303-377] 1.8 |
| SMART |
Ig_sub2 (IPR003598) - T[27-95] 3.3E-11 - T[124-190] 4.7E-11 - T[218-282] 4.9E-18 |
| Pfam |
Ig_I-set (IPR013098) - T[219-292] 2.8E-20 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[387-578] 6.91E-21 - T[589-777] 1.45E-33 - T[800-873] 9.11E-9 |
| SMART |
FN3_dom (IPR003961) - T[389-476] 2.8E-4 - T[488-573] 7.1E-5 - T[588-672] 1.9E-7 - T[687-767] 3.2E-9 - T[789-874] 0.12 |
| CDD |
FN3_dom (IPR003961) - T[389-483] 2.20546E-11 - T[490-570] 9.50763E-10 - T[589-682] 7.69634E-12 - T[687-773] 7.54776E-12 - T[805-871] 4.07062E-6 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[391-489] 15.053 - T[490-589] 16.197 - T[590-685] 18.643 - T[689-781] 15.59 - T[790-895] 10.841 |
| Pfam |
FN3_dom (IPR003961) - T[490-570] 8.9E-8 - T[589-675] 5.6E-11 - T[689-768] 5.5E-8 - T[803-870] 7.5E-7 |
| Pfam |
Neurofascin/L1/NrCAM_C (IPR026966) - T[918-1015] 1.4E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NRCAM_HUMAN | 32.617 % | 473 | 1.12E-147 |
| NCHL1_HUMAN | 29.203 % | 421 | 3.34E-129 |
| L1CAM_HUMAN | 28.823 % | 400 | 7.9E-121 |