- Transcript 'Cisavi.CG.ENS81.R98....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R98.107331-113157.03395.t
Possible name(s)
HOXA4; HOXB4; HOXC4
Gene model
Location
R98 [107,330 / 113,157]
Amino acid sequence
Length: 329
>Cisavi.CG.ENS81.R98.107331-113157.03395.p
MSIIDQQSELDFHNRTYVTNGIIKDRDVIEQGMPFFQNHQESAPVLNLSDVNGRNSEQTH
QSSESGDVEKLEEDFQAMGNRRCSGPPVVYPWMKRIHVSQVINGLESGKRPRTAYTRHQV
LELEKEFHYNRYLTRRRRIEIAHGLCLSERQVKIWFQNRRMKWKKDHKLPNTKVRNPPTS
SLPNISTPSPPMTSMNPLLPNLSLTRTSPHSYEKSPPITPTGGEYPIGLLQPQMTPRELN
DAIGDSPTTDISYKSNERRELEPMTSFQECNHQRSDQHPIMFDTSGIPHSTFYGGMMGIP
NNWNPDPTRGYISANQNSPYPHYPLSTFQ
Nucleotide sequence
Length: 990
>Cisavi.CG.ENS81.R98.107331-113157.03395.t
ATGTCAATTATTGATCAACAATCTGAACTGGATTTCCATAATCGAACCTACGTAACAAAC
GGCATTATCAAGGATCGTGACGTCATAGAACAAGGAATGCCGTTTTTCCAGAATCACCAA
GAATCTGCTCCAGTTCTGAACTTGTCAGATGTCAATGGAAGAAATAGTGAACAGACACAT
CAAAGTAGTGAATCTGGCGACGTGGAAAAGCTTGAGGAAGACTTCCAAGCGATGGGGAAC
AGAAGGTGTAGTGGACCACCGGTTGTATATCCCTGGATGAAACGAATCCATGTCAGCCAA
GTAATCAACGGTTTGGAGTCTGGTAAAAGACCTCGGACCGCATACACACGCCACCAAGTG
TTGGAGTTGGAAAAGGAATTCCACTACAATAGATATCTTACAAGGAGACGAAGAATAGAA
ATCGCACATGGACTTTGTCTCAGCGAACGACAGGTGAAGATTTGGTTCCAAAACCGTCGA
ATGAAGTGGAAGAAAGATCACAAACTCCCCAACACGAAAGTCAGGAACCCACCTACGTCA
TCATTACCCAACATTTCGACCCCCAGTCCCCCTATGACGTCGATGAACCCATTGTTACCC
AATCTATCTCTAACCCGGACCTCGCCGCATAGCTACGAGAAAAGTCCACCAATAACTCCC
ACAGGAGGGGAATACCCGATTGGGTTGCTGCAACCACAAATGACCCCTCGAGAGTTAAAT
GACGCAATAGGGGATTCCCCGACGACGGACATAAGTTACAAAAGCAACGAAAGACGGGAG
TTGGAACCGATGACGTCATTCCAGGAATGCAACCACCAAAGAAGCGATCAGCATCCGATA
ATGTTTGATACTTCAGGAATTCCACATTCCACCTTCTACGGTGGCATGATGGGGATACCA
AACAACTGGAACCCAGATCCAACACGTGGTTACATATCAGCCAATCAGAATTCGCCATAC
CCCCACTACCCCCTTTCCACTTTTCAGTGA
| PRINTS |
Homeobox_antennapedia (IPR017995) - T[88-95] 2.0E-5 - T[109-124] 2.0E-5 |
| ProSitePatterns |
Homeobox_Antennapedia_CS (IPR001827) - T[89-94] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[90-166] 1.28E-26 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[106-166] 21.751 |
| SMART |
Homeobox_dom (IPR001356) - T[108-170] 3.0E-26 |
| CDD |
Homeobox_dom (IPR001356) - T[109-167] 3.22461E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[109-165] 9.0E-23 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[130-141] 1.1E-8 - T[145-155] 1.1E-8 - T[155-164] 1.1E-8 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[141-164] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXA4_HUMAN | 84.783 % | 159 | 1.39E-46 |
| HXC4_HUMAN | 74.107 % | 167 | 5.74E-50 |
| HXB4_HUMAN | 80.22 % | 158 | 7.27E-47 |
