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  1. Transcript 'KH2012:KH.L153.36.v1...' > 
  2. Transcript 'KH2012:KH.C3.147.v1....' > 
  3. Transcript 'Cisavi.CG.ENS81.R9.3...'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R9.3393805-3395292.19181.t

Possible name(s)

PRDM1; ZNF235; ZNF683

Gene model

Cisavi.CG.ENS81.R9.3393805-3395292

Location

R9 [3,393,804 / 3,395,292]

Sequences

Amino acid sequence

Length: 144

>Cisavi.CG.ENS81.R9.3393805-3395292.19181.p
MSGRCKRGPNSGYKSLPYPLRKENGKIVYECNVCFKRFGQLSNLKVHLRVHTGERPFKCA
TCAKGFTQLAHLQKHNLVHTGEKPHECGVCNKRFSSTSNLKTHMRLHSSNEYTCGLNSVL
GVPSSLQTALQFHSNQSPTLMRWY

Nucleotide sequence

Length: 950

>Cisavi.CG.ENS81.R9.3393805-3395292.19181.t
TTTCGCCTAAAAGTGTTTCTCCTGTCAACAGCGTCGCAAGTAACAGTGAATCAAGTTACA
ACATGAGCGGTAGATGCAAGCGCGGTCCAAATTCCGGCTACAAGTCCCTGCCATATCCAC
TTCGCAAAGAAAATGGAAAGATAGTCTACGAGTGCAACGTTTGTTTTAAGCGGTTCGGAC
AACTGTCCAATTTAAAAGTTCATTTGAGAGTTCACACCGGTGAGAGGCCTTTCAAATGCG
CCACTTGCGCGAAAGGATTCACCCAGTTGGCTCATCTGCAGAAACACAACCTCGTGCACA
CCGGGGAAAAACCACACGAATGTGGCGTCTGCAACAAACGATTCAGCTCGACCAGCAATT
TGAAAACTCATATGAGATTGCACAGCAGCAACGAGTACACATGCGGTTTGAACTCGGTTC
TGGGCGTCCCTTCATCACTGCAGACTGCGCTTCAGTTCCACTCCAACCAGTCACCAACTC
TCATGAGGTGGTATTAGAAACTTAACAAAAAACAGAAGAAAACAGCAAACTCCATCCATT
TTTGGTTGACAATCCAATTTAAAAGTTCCTATAGCGATTATTTTGCCTTTATGCCATTTT
GTAGACTTCTTTAACCTAGTATATAGCGTGCCACTGTTACTTAAAATGCCTAACGTTTTT
TGGACGAATTTACGTTTTTTTTTCTTTTTATTGTGGGATCAGACTCTTTTGTAGTTCCCA
AATAAAAAATCAACAATTAATTTCATTACATATAGTAGGGATTTTACTTTTTCTATATAT
ATATATTAATTTTTGACGAAAATTCGTAGTTTTGTGTATGTATATTATGTGATATGTAAT
CAAACTGTAATAATGTTATTTAGCCATCTTTAGAAATCACTGTCTTGTACTTATTCCGTA
TGTTAAAAGTGCAAAATATACAGGAAAATGTAGAAATATAAGAAAACGAA

InterProScan

SUPERFAMILY
Znf_C2H2_sf (IPR036236) - T[16-66] 4.5E-14 - T[55-107] 1.77E-17
SMART
Znf_C2H2_type (IPR013087) - T[29-51] 0.0026 - T[57-79] 0.2 - T[85-107] 6.0E-4
ProSiteProfiles
Znf_C2H2_type (IPR013087) - T[29-56] 16.124 - T[57-84] 15.604 - T[85-112] 12.715
ProSitePatterns
Znf_C2H2_type (IPR013087) - T[31-51] . - T[59-79] . - T[87-107] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ZN235_HUMAN 44.828 % 108 1.57E-28
PRDM1_HUMAN 81.905 % 182 2.25E-54
ZN683_HUMAN 61.069 % 159 3.76E-47